Table 3. The long repeat sequences detected in E. sativa cp genome.
No. | Repeat | Type | Repeat 1 Start (bp) | Repeat 2 Start (bp) | Region |
---|---|---|---|---|---|
1 | 30 | P | 61768 | 61768 | LSC |
2 | 30 | P | 7627 | 44148 | LSC |
3 | 30 | F | 106858 | 106890 | IRB |
4 | 30 | P | 106858 | 129922 | IRB; SSC |
5 | 30 | P | 106890 | 129954 | IRB; SSC |
6 | 32 | P | 6262 | 6262 | LSC |
7 | 34 | F | 106854 | 106886 | IRB |
8 | 34 | P | 106854 | 129922 | IRB; SSC |
9 | 34 | P | 106886 | 129954 | IRB; SSC |
10 | 34 | F | 129922 | 129954 | SSC |
11 | 35 | P | 75818 | 75818 | LSC |
12 | 35 | P | 64224 | 64224 | LSC |
13 | 36 | P | 9229 | 9229 | LSC |
14 | 36 | P | 35536 | 35536 | LSC |
15 | 37 | F | 97938 | 119515 | IRB; SSC |
16 | 37 | P | 119515 | 138867 | SSC; IRA |
17 | 39 | F | 43041 | 97935 | LSC; IRB |
18 | 39 | P | 43041 | 138868 | LSC; IRA |
19 | 40 | P | 28188 | 28188 | LSC |
20 | 40 | P | 75813 | 75818 | LSC |
21 | 40 | F | 148542 | 148563 | IRA |
22 | 41 | P | 35531 | 35536 | LSC |
23 | 42 | F | 97933 | 119510 | IRB; SSC |
24 | 42 | P | 119510 | 138867 | SSC; IRA |
25 | 44 | P | 73307 | 73307 | LSC |
26 | 44 | R | 35505 | 35505 | LSC |
27 | 44 | P | 76826 | 76826 | LSC |
28 | 44 | P | 62009 | 62009 | LSC |
29 | 45 | P | 112907 | 112907 | SSC |
30 | 47 | F | 88239 | 88260 | IRB |
31 | 47 | P | 88239 | 148535 | IRB; IRA |
32 | 47 | P | 88260 | 148556 | IRB; IRA |
33 | 47 | F | 148535 | 148556 | IRA |
34 | 49 | P | 29704 | 29704 | LSC |
35 | 49 | C | 35518 | 35519 | LSC |
36 | 49 | P | 55354 | 55354 | LSC |
37 | 50 | P | 185 | 185 | LSC |
38 | 52 | F | 37938 | 40162 | LSC |
39 | 55 | F | 37935 | 40159 | LSC |
40 | 55 | P | 66074 | 66074 | LSC |
41 | 56 | P | 179 | 185 | LSC |
42 | 58 | F | 37932 | 40156 | LSC |
43 | 73 | F | 37917 | 40141 | LSC |
44 | 74 | F | 37899 | 40123 | LSC |
45 | 76 | F | 37914 | 40138 | LSC |
46 | 77 | F | 37896 | 40120 | LSC |
47 | 81 | F | 37909 | 40133 | LSC |
48 | 82 | F | 37902 | 40126 | LSC |
49 | 85 | F | 37905 | 40129 | LSC |
Note: P represents for palindrome, R for reverse, F for forward, and C for complement types.