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. 2021 Mar 12;12:1627. doi: 10.1038/s41467-021-21881-2

Fig. 6. Structural model of mouse RIPK3 fibril core (PDB ID 6JPD).

Fig. 6

a Superposition of ten monomer conformations with the lowest energy, calculated using XPLOR-NIH software. The dimension of the structure is labeled on the sides. The unambiguous constraints used in the calculation are also marked using the dashed lines. b Stick representation of the mouse RIPK3 fibril medoid model selected from 10 fibril structures with the lowest energy. Both (a, b) are viewed down the fibril axes. c Side view of medoid model using cartoon representation. d Side view of medoid model indicating possible hydrogen bonding between sides chains of N443, N444, Q449, and N452 (The labels in the figure are ASN3, ASN4, GLN9, and ASN12). All figures were prepared using VMD (https://www.ks.uiuc.edu/Research/vmd/)49.