Table 3.

Association of clinical features with significant regions identified by STAC.

Chromosome	Cytoband	Event	Clinical Features	p Value	FDR
Chr3	p21.2	DEL	Fuhrman Grade (1-2)	0.02	0.15
Chr3	p25.2	DEL	Fuhrman Grade (1–2)	0.01	0.14
Chr5	q34–q35.1	AMP	Metastasis	0.03	0.18
			Tumor size (≥7 cm)	0.01	0.14
			Fuhrman Grade (3–4)	0.01	0.14
Chr7	p21.2	AMP	Tumors T3/T4	0.02	0.15
Chr9	p21.3	DEL	Metastasis	0.01	0.14
			Tumor size (≥7 cm)	0.02	0.15
			Tumors T3–T4	0.04	0.19
			Clinical stage (3–4)	0.01	0.14
			Tumor size (≥7 cm)	0.04	0.19
Chr9	p24.1	DEL	Tumors T3-T4	0.04	0.19
Chr14	q22.1	DEL	Clinical stage (3–4)	0.04	0.19
			Outcome (death)	0.02	0.15
			Metastasis	0.03	0.19
			Fuhrman Grade (3–4)	0.01	0.14

AMP = Amplification; DEL = Deletion.