AP	Altered proteins
BCA	Bicinchoninic acid assay
BP	Biological processes
DTT	Dithiothreitol
EN	Experimental Null
FA	Formic acid
FADR	False Altered-protein Discovery Rate
FC	Fold change
FPI	Fluid percussion injury
GO	Gene Ontology
IAM	Iodoacetamide
IPA	Ingenuity Pathway Analysis
LC	Liquid chromatography
MA	Methamphetamine
MS	Mass spectrometry
NSS	Neurological Severity Score
PCA	Principal Component Analysis
PPI	Protein–protein interaction
ROS	Reactive oxygen species
SEPOD	Surfactant cocktail-aided Extraction/Precipitation/On-pellet Digestion
SH	Sham control
TBI	Traumatic brain injury
TM	Mild TBI
TS	Severe TBI
TSm	Severe TBI with MA treatment
UHF	Ultra-high-field