ARF	auxin response factor
CMS	cytoplasmic male sterility
DEG	differentially expressed gene
DEM	differentially expressed miRNA
HD-ZIP	homeodomain–leucine zipper
HT	high temperature
IPT	inorganic phosphate transporter
LAC	laccase
MFE	minimal folding energy
MFEIs	minimal folding energy indices
miRNA	microRNA
NAC	NAM/ATAF/CUC
NT	normal temperature
NF-YA	nuclear transcription factor Y subunit A
PPR	pentatricopeptide repeat
PPR MIT	PPR proteins, mitochondrial-like
qRT-PCR	quantitative real-time PCR
QTL	quantitative trait loci
RH	relative humidity
RLM-5′-RACE	5′-RNA ligase mediated rapid amplification of cDNA ends
SD	standard deviation
sRNA	small RNA
SPL	Squamosa promoter-binding protein-like
TCP	Teosinte-branched 1/Cycloidea/Proliferating
TF	transcription factor
TPM	transcripts per million
WT	wild-type