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. Author manuscript; available in PMC: 2021 Mar 15.
Published in final edited form as: Cell Rep. 2021 Feb 9;34(6):108726. doi: 10.1016/j.celrep.2021.108726

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Anti-p53 (DO-1) Santa Cruz Cat. # sc-126; RRID: AB_628082
Anti-p53 (CM5p) Leica Biosystems Cat. # NCL-L-p53-CM5p; RRID: AB_2744683
Anti-GRP94 Santa Cruz Cat. # sc-32249; RRID: AB_627676
Anti-CD63 (for western blotting) System Biosciences Cat. # EXOAB-CD63A-1; RRID: AB_2561274
Anti-CD63 (for immune-gold staining) Abcam Cat. # ab217345; RRID: AB_2754982
Anti-Alix Santa Cruz Cat. # sc-53538; RRID: AB_673821
Anti-TSG101 Abcam Cat. # ab30871; RRID: AB_2208084
Anti-PDX1 Cell Signaling Technology Cat. # 5679; RRID: AB_10706174
Anti-Cre Cell Signaling Technology Cat. # 15036; RRID: AB_2798694
Anti-αSMA Abcam Cat. # ab5694; RRID: AB_2223021
Anti-Fibronectin Abcam Cat. # ab2413; RRID: AB_2262874
Anti-HSP90 Cell Signaling Technology Cat. # 4877; RRID: AB_2233307
Anti-GAPDH Sigma-Aldrich Cat. # G8795; RRID: AB_1078991
Goat-anti-Rabbit IgG (H&L) Electron Microscopy Sciences Cat. # 25116; RRID: N/A
Goat-anti-Mouse IgG (H&L) Electron Microscopy Sciences Cat. # 25129; RRID: N/A
AffiniPure Fab Fragment
Goat Anti-Mouse IgG (H+L)
Jackson ImmunoResearch Cat. # 115-007-003; RRID: AB_2338476
Peroxidase AffiniPure Goat
Anti-Mouse IgG + IgM (H+L)
Jackson ImmunoResearch Cat. # 115-035-068; RRID: AB_2338505
Peroxidase AffiniPure F(ab’)2 Fragment
Goat Anti-Rabbit IgG, F(ab’)2 fragment specific
Jackson ImmunoResearch Cat. # 111-036-047; RRID: AB_2337945
HRP Goat Anti-Rat Ig BD Biosciences Cat. # 554017; RRID: AB_395211
ECL Anti-Rabbit IgG, Horseradish Peroxidase GE Healthcare Cat. # GENA934; RRID: AB_2722659
ECL Anti-Mouse IgG, Horseradish Peroxidase GE Healthcare Cat. # NA931; RRID: AB_772210
CD140a (PDGFRA) Monoclonal Antibody (APA5), PE, eBioscience Thermo Fisher Scientific Cat. # 12-1401-81; RRID: AB_657615
APC anti-mouse CD45 Antibody BioLegend Cat. # 103111; RRID: AB_312976
CD326 (EpCAM) Monoclonal Antibody (G8.8), eFluor 450, eBioscience Thermo Fisher Scientific Cat. # 48-5791-82; RRID: AB_10717090
Anti-CD31 antibody [390] (PE/Cy7) Abcam Cat. # ab46733; RRID: AB_868905
Bacterial and virus strains
Stellar Competent Cells Clontech Cat. # 636763
Firefly Luciferase Lentifect Purified Lentiviral Particles Genecopoeia Cat. # LPP-FLUC-Lv100c
Biological samples
Patients with HGSOC (serum and tissues) MDACC N/A
Chemicals, peptides, and recombinant proteins
Nutlin-3A Sigma-Aldrich Cat. # SML0580
17-AAG SelleckChem Cat. # S1141-25MG
ML385 Millipore Sigma Cat. # SML1833-5MG
VER-155008 Cayman Chemical Cat. # 1134156-31-2
Tris base Thermo Fisher Scientific Cat. # BP152-5
NaCl Thermo Fisher Scientific Cat. # AC424290050
Glycine Thermo Fisher Scientific Cat. # BP381-5
Sucrose Sigma-Aldrich Cat. # 84097-1KG
Deuterium oxide Sigma-Aldrich Cat. # 151882
Glutaraldehyde solution Sigma-Aldrich Cat. # G7651-10ML
Proteinase K Sigma-Aldrich Cat. # P6556-100MG
Ampicillin Sigma-Aldrich Cat. # 10835269001
Triton X-100 Thermo Fisher Scientific Cat. # BP151-500
Xho I enzyme NEB Cat. # R0146S
EcoR I enzyme NEB Cat. # R0101S
Fish Gelatin Aurion Cat. # 900.033
10% Formalin Thermo Fisher Scientific Cat. # 23-305510
Diva Decloaker, 10X Biocare Medical Cat. # SKU: DV2004
Halt Protease Inhibitor Cocktail (100X) Thermo Fisher Scientific Cat. # 78438
Luria Broth Base Thermo Fisher Scientific Cat. # 12795027
Fisher Chemical Permount Mounting Medium Thermo Fisher Scientific Cat. # SP15-100
TRIzol Reagent Thermo Fisher Scientific Cat. # 15596018
SYBR Green Thermo Fisher Scientific Cat. # A25778
FuGENE HD Transfection Reagent Promega Cat. # E2311
Accumax StemCell Technologies, Inc. Cat. # 7921
ACK lysing buffer Thermo Fisher Scientific Cat. # A1049201
RIPA Lysis and Extraction Buffer Thermo Fisher Scientific Cat. # 89900
Ghost Dye Red 710 Tonbo Biosciences Cat. # 13-0871-T100
Epidermal Growth Factor from murine submaxillary gland Sigma-Aldrich Cat. # E4127-5X.1MG
Critical commercial assays
Universal Magnetic Co-IP Kit Active Motif Cat. # 54002
Human Cytokine Array Kit R&D Systems Cat. # ARY005B
exoRNeasy Midi and Maxi Kit QIAGEN Cat. # 77144
Total Exosome Isolation Reagent Thermo Fisher Scientific Cat. # 4478359
Restore Plus Western Blot Stripping Buffer Thermo Fisher Scientific Cat. # 46430
Pierce BCA Protein Assay Kit Thermo Fisher Scientific Cat. # 23225
Direct-zol RNA Kits Zymo Research Cat. # R2062
QIAGEN Plasmid Plus Midi kit QIAGEN Cat. # 12945
Rapid DNA Ligation Kit Thermo Fisher Scientific Cat. # K1423
Qubit Protein Assay Kit Thermo Fisher Scientific Cat. # Q33212
Qubit RNA HS Assay Kit Thermo Fisher Scientific Cat. # Q32852
Verso cDNA Synthesis Kit Thermo Fisher Scientific Cat. # AB1453B
Universal Mycoplasma Detection Kit ATCC Cat. # 30-1012K
Deposited data
mRNA Array This paper GEO: GSE164248
Uncropped western blotting This paper Document S1
RNA Sequencing Data This paper GEO: GSE148698
Experimental models: cell lines
H1975 Kindly provided by Heymach lab (MDACC) N/A
H1299 Kindly provided by Heymach lab (MDACC) N/A
RKO Kindly provided by Lee Ellis lab (MDACC) N/A
A549 Kindly provided by Heymach lab (MDACC) N/A
HT29 Kindly provided by Lee Ellis lab (MDACC) N/A
A2780 MDACC cell line bank N/A
LNCaP MDACC cell line bank N/A
DU145 ATCC cell line bank N/A
KLE MDACC cell line bank N/A
T47D MDACC cell line bank N/A
HEK293T MDACC cell line bank N/A
MCF7 Kindly provided by Gabriel Lopez lab (MDACC) N/A
NoF 151 fibroblasts Kindly provided by Jinsong Liu lab (MDACC) N/A
KPC PDAC cells Kindly provided by Anirban Maitra lab (MDACC) N/A
Experimental models: organisms/strains
Mouse: B6.129S2-Trp53tm1Tyj The Jackson Laboratory Stock No: 002101
Mouse: NCRNU-F nude (NCr) Taconic Model #: NCRNU-F
Oligonucleotides
Primers for quantitative real-time
RT-PCR, see Table S3
This paper N/A
Primers for mCherry-p53 cloning plasmids, Forward: ATTACTCGAGCGATGGAGGAGCCGCAGTCAGA This paper N/A
Recombinant DNA
pLKO-p53-shRNA-427 Todd Waldman Lab Addgene, Plasmid # 25636
pLKO.1 puro David Sabatini Lab Addgene, Plasmid # 1864
pLenti6/V5-p53_R273H Bernard Futscher Lab Addgene, Plasmid # 22934
pLVX-mCherry-C1 Lenti-viral vector Clontech Cat. # 632561
Plasmid: mCherry-p53 This paper N/A
Software and algorithms
Prism Version 8.00 GraphPad Software https://www.graphpad.com/
Ingenuity Pathway Analysis QIAGEN Bioinformatics https://digitalinsights.qiagen.com/
NetWalker Kakajan Komurov, Dursun S, Erdin S, Ram P.T. https://www.netwalkersuite.org/
ImageJ NIH Image https://imagej.nih.gov/ij/index.html
R version 4.0.3 limma package Bioconductor https://www.bioconductor.org/packages/devel/bioc/vignettes/limma/inst/doc/usersguide.pdf
Transcriptome Analysis Console (TAC) Software Thermo Fisher Scientific https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/affymetrix-transcriptome-analysis-console-software.html
CorelDraw Graphic 2018 CorelDraw http://www.coreldraw.com/e/
Adobe Photoshop CC 2018 Adobe https://www.adobe.com/