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. 2021 Mar 2;118(10):e2024083118. doi: 10.1073/pnas.2024083118

Fig. 4.

Fig. 4.

Training energy barriers and transition rates. (A) After 18 iterations of our procedure, the energy barrier ΔE is trained to within 0.2% of the target barrier ΔE*. Shown is the error [error(ΔE)(ΔEΔE*)/ΔE*] as a function of the target. (B) The transition rates measured via MD simulation (kMD; black data) are not exactly proportional to eβΔE* (the dashed line has a slope of β), indicating that the prefactor ν in Eq. 3 is not constant. However, this prefactor is captured reasonably well by the Kramers approximation (kKramers; blue data). (C) After 18 iterations of training on the Kramers rate kKramers, we obtain an accuracy within 0.2% of the target rate k*. (D) The rates measured via MD simulation kMD agree very well with the target rate k* (the solid line corresponds to kMD=k*). Thus, we are able to accurately and quantitatively design the transition kinetics of the seven-particle clusters we consider.