Banjo |
Bayesian network inference with Java objects |
BN |
Bayesian network |
CE |
Community extraction |
CLR |
Context-likelihood-relatedness |
CNA |
Copy number aberration |
CSPRV |
Cancer subtype prediction using
|
DAG |
Directed acyclic graph |
DEG |
Differential expressed gene |
DiME |
Disease module extraction |
DINGO |
Differential network analysis in genomics |
EMT |
Epithelial-to-mesenchymal transition |
EPoC |
Endogenous perturbation analysis of cancer |
GBM |
Glioblastoma multiforme |
GBM-BioDP |
Glioblastoma Bio Discovery Portal |
GEO |
Gene Expression Omnibus |
GMM |
Gaussian mixture model |
GO |
Gene Ontology |
GWAS |
Genome-wide association study |
HGG |
High-grade glioma |
IAMB |
Incremental associated Markov blanket |
IDA |
Intervention calculus when the DAG is absent |
iDINGO |
Integrative differential network analysis in genomics |
InTRINSiC |
Integrative Modeling of Transcription Regulatory Interactions for |
|
Systematic Inference of Susceptibility in Cancer |
KEGG |
Kyoto Encyclopedia of Genes and Genomes |
KINC |
Knowledge Independent Network Construction |
LGG |
Low-grade glioma |
TCGA |
The Cancer Genome Atlas |
CCLE |
Cancer Cell Line Encyclopedia |
CGGA |
Chinese Glioma Genome Atlas |
EN |
Elastic net |
lasso |
Least absolute shrinkage selection operator |
lncRNA |
Long non-coding RNA |
MI |
Mutual information |
MSLCRN |
Module-specific lncRNA-mRNA causal regulatory networks |
NGS |
Next-generation sequencing |
PDX |
Patient-derived xenograft |
RNA-seq |
RNA sequencing |
scRNA-seq |
Single-cell RNA sequencing |
SNF |
Similarity Network Fusion |
SNP |
Single-nucleotide polymorphism |
SYGNAL |
Systems Genetics Network Analysis |
TAM |
Tumor-associated macrophage |
TCI |
Tumor-specific causal inference |
TF |
Transcriptional factor |
TRN |
Transcriptional regulatory network |
twiner |
Twin networks recovery |
WGCNA |
Weighted gene coexpression network analysis |
WSNF |
Weighted similarity network fusion |