TABLE 5.

A summary of observed linkage disequilibrium among pairwise markers and the number of significant pairwise markers per chromosome and genome using the original dataset

Chromosome	Cultivars				Landraces
	NSP	Distance (cM)	R2	SSP	NSP	Distance (cM)	R2	SSP
1A	20,325	6.5208	0.1095	4,019	20,325	6.5208	0.0731	4,762
1B	26,450	4.5786	0.1373	5,867	26,450	4.5786	0.0955	8,673
1D	13,350	11.9226	0.1803	3,453	13,350	11.9226	0.1183	4,137
2A	23,950	4.8296	0.1315	5,427	23,950	4.8296	0.1276	8,259
2B	33,350	4.2026	0.1288	8,539	33,350	4.2026	0.0966	9,575
2D	17,050	6.5433	0.2647	4,553	17,050	6.5433	0.1999	5,078
3A	21,500	9.5170	0.0970	3,613	21,500	9.5170	0.0706	4,114
3B	33,050	4.5077	0.1281	7,928	33,050	4.5077	0.0932	9,166
3D	7,550	22.2324	0.0933	701	7,550	22.2324	0.0927	1547
4A	17,450	8.0520	0.1312	3,752	17,450	8.0520	0.1106	4,245
4B	10,600	9.9421	0.0995	1847	10,600	9.9421	0.0527	1,386
4D	3,700	25.9186	0.1359	588	3,700	25.9186	0.1116	1,010
5A	18,250	8.0378	0.1085	3,289	18,250	8.0378	0.0816	4,711
5B	28,850	6.5358	0.1314	7,721	28,850	6.5358	0.0726	6,691
5D	8,350	27.4992	0.0936	805	8,350	27.4992	0.0696	1,394
6A	17,850	7.3937	0.1057	3,279	17,850	7.3937	0.1210	6,715
6B	27,850	4.3847	0.1409	6,565	27,850	4.3847	0.0753	6,593
6D	9,250	18.1532	0.1055	1,397	9,250	18.1532	0.0802	2059
7A	28,550	6.1499	0.1520	5,580	28,550	6.1499	0.1123	8,528
7B	26,800	4.7642	0.1118	5,429	26,800	4.7642	0.0837	6,846
7D	10,750	20.0585	0.1618	2063	10,749	20.0606	0.0932	2,487
A genome	147,875	50.5007	0.1194	28,959	147,875	50.5007	0.0995	41,334
B genome	186,950	38.9156	0.1254	43,896	186,950	38.9156	0.0814	48,930
D genome	70,000	132.3277	0.1479	13,560	69,999	132.3298	0.1094	17,712
Total	404,825	221.7440	0.1309	86,415	404,824	221.7461	0.0968	107,976

NSP: Number of SNP pairwise, SSP: Significant pairwise SNP (p < .01).