TABLE 6.

A summary of observed linkage disequilibrium among pairwise markers and the number of significant pairwise markers per chromosome and genome using the imputed dataset

Chromosome	Cultivars				Landraces
	NSP	Distance (cM)	R2	SSP	NSP	Distance (cM)	R2	SSP
1A	110,675	1.3446	0.1392	33,200	110,675	1.3446	0.1079	41,497
1B	149,000	0.9442	0.1923	59,280	149,000	0.9442	0.1497	74,142
1D	47,950	3.5143	0.3028	20,528	47,950	3.5143	0.2257	24,767
2A	136,250	0.8628	0.2672	64,307	136,250	0.8628	0.2766	76,493
2B	185,800	0.7705	0.1841	77,464	185,800	0.7705	0.1554	86,029
2D	67,250	1.6415	0.2201	21,080	67,250	1.6415	0.1777	26,828
3A	95,500	2.3004	0.1487	32,745	95,500	2.3004	0.1212	33,346
3B	199,900	0.7787	0.2307	92,545	199,900	0.7787	0.2029	103,406
3D	35,850	4.6331	0.1521	7,560	35,850	4.6331	0.1547	12,763
4A	129,850	1.3855	0.3447	66,704	129,850	1.3855	0.3293	69,407
4B	59,800	2.2142	0.1378	18,268	59,800	2.2142	0.0968	16,220
4D	13,200	9.3335	0.1573	2,876	13,200	9.3335	0.1239	4,212
5A	71,350	2.0200	0.1620	24,756	71,350	2.0200	0.1344	28,504
5B	151,500	1.3002	0.1888	66,026	151,500	1.3002	0.1377	68,944
5D	31,450	6.9574	0.1470	7,085	31,450	6.9574	0.1286	9,923
6A	98,550	1.3027	0.1721	37,415	98,550	1.3027	0.1688	48,695
6B	188,750	0.6656	0.1834	75,156	188,750	0.6656	0.1275	82,520
6D	37,800	4.1908	0.1357	9,535	37,800	4.1908	0.1358	14,802
7A	147,900	1.1793	0.2230	58,549	147,900	1.1793	0.1951	71,306
7B	148,700	0.9965	0.1464	53,428	148,700	0.9965	0.1154	57,384
7D	45,900	4.4855	0.2044	14,278	45,900	4.4855	0.1436	17,082
A genome	790,075	10.39523	0.2081	317,676	790,075	10.39523	0.1905	369,248
B genome	1,083,450	7.669932	0.1805	442,167	1,083,450	7.669932	0.1408	488,645
D genome	279,400	34.75617	0.1885	82,942	279,400	34.75617	0.1557	110,377
Total	2,152,925	52.82133	0.1924	842,785	2,152,925	52.82133	0.1623	968,270

NSP: Number of Pairwise SNP, SSP: Significant Pairwise SNP (p < .01).