Table 3.

RNASeq values for immune function genes for TCGA-KIRC barcodes representing co-detection of TcR-α and TcR-β recombination reads in WXS files

Set number for matching P value comparisons	KIRC barcode sets and set comparisons	PD-1	PD-L1	PD-L2	CTLA4	CD28	FOXP3	IL-2
1	Productive α and productive β	153.53	121.25	146.52	58.40	154.26	84.23	1.38
2	No detection of productive α or β	26.50	49.25	66.28	15.12	46.63	15.27	0.27
3	Productive α and no productive β	97.74	56.66	111.01	34.40	100.02	50.22	0.67
1 versus 2	P values for comparisons of sets 1 and 2	2.62 E-06	0.40	1.18 E-05	1.24 E-05	3.86 E-13	1.80 E-07	2.14 E-04
1 versus 3	P values for comparisons of sets 1 and 3	0.013	0.24	0.011	0.0011	1.28 E-05	0.0016	0.0017