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. 2020 Aug 16;6(2):veaa045. doi: 10.1093/ve/veaa045

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© The Author(s) 2020. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — Genomic epidemiology of IBV in coastal Kenya. (a) An ML phylogenetic tree reconstructed from concatenated eight segments of IBV (n = 111) from the nine sampled KHDSS outpatient facilities and KCH. A total of fifty-one reference sequences (non-Kenya) were included. The taxa are indicated by filled circles at the tips and coloured by health facility of sampling. (b) The location of detection for the defined phylogenomic clusters. Their first three letters abbreviate names of the outpatient health facilities are. (c) The monthly prevalence of the defined phylogenomic clusters.