Table 2. Example of input table to the Rank step.

ID	p-value	PathWay Genes
hsa05165	8.79E−06	FZD7, THBS4, COL4A1, COL9A2, TNC, ITGA8, PTK2, PPP2CA, CCND2, IKBKB, ATP6V1G2, ATP6V0A2, JAG1, MAML3
hsa04151	1.40E−05	FGF2, IGF1, FLT3LG, ANGPT1, COL4A1, COL9A2, THBS4, TNC, ITGA8, PTK2, LPAR1, GNB1, MLST8, RPS6, PPP2CA, CCND2, IKBKB
hsa04062	2.14E−05	CCL18, ADCY4, ADCY5, IKBKB, ROCK2, GNB1, PTK2, PRKCB, GRK5
hsa03010	1.82E−04	RPS6, RPS12, RPS21, RPS29, RPL17-C18orf32, RPL18, RPL22L1, RPL31
hsa05170	4.60E−05	PTK2, PRKCB, GNB1, IKBKB, CCNB3

Note:

The list consists from three columns, ID is the KEGG Pathway id, p-value is the p-value of the pathways computed by pathfidR while the last column is the list of genes belonging to the KEGG pathway.