Table 5. Description of the 10 data sets used in our study.
The data sets are obtained from GEO. Each entry has the GEO code the name of the data, the number of samples and the classes of the data.
| GEO Accession | Title | Sample count | Classes |
|---|---|---|---|
| GDS1962 | Glioma-derived stem cell factor effect on angiogenesis in the brain | 180 pos = 157 neg = 23 |
non-tumor = 23 (neg) astrocytomas = 26 (pos) glioblastomas = 131 (pos) |
| GDS2519 | Early-stage Parkinson’s disease: whole blood | 105 pos = 50 neg = 55 |
healthy control = 22 (neg) neurodegenerative disease control = 33 (neg) Parkinson disease = 50 (pos) |
| GDS3268 | Colon epithelial biopsies of ulcerative colitis patients | 202 pos = 73 neg = 129 |
normal = 73 ulcerative colitis = 129 |
| GDS2547 | Metastatic prostate cancer (HG-U95C) | 164 pos = 75 neg = 89 |
normal = 75 tumor = 89 |
| GDS5499 | Pulmonary hypertensions: PBMCs | 140 pos = 99 neg = 41 |
control = 41 (neg) idiopathic pulmonary arterial hypertension = 30 (pos) scleroderma-associated pulm. arterial hypert. = 42 (pos) systemic sclerosis (SSc) without pulm. hypert. = 19 (pos) SSc, interstitial lung disease & pulm. hypert. = 8 (pos) |
| GDS3646 | Celiac disease: primary leukocytes | 132 pos = 110 neg = 22 |
healthy control =22 celiac disease = 110 |
| GDS3874 | Diabetic children: peripheral blood mononuclear cells (U133A) | 117 neg = 24 pos = 93 |
healthy = 24 type 1,2 diabetes =93 |
| GDS3837 | Non-small cell lung carcinoma in female nonsmokers | 120 pos = 60 neg = 60 |
Lung Cancer = 60 Control = 60 |
| GDS5037 | Severe asthma: bronchial epithelial cell | 108 Pos = 88 Neg = 20 |
mild asthma = 50 control = 20 severe asthma = 38 |
| GDS4516_4718 | Colorectal cancer: laser microdissected tumor tissues Colorectal cancer: homogenized tumor tissues |
148 pos = 104 neg = 44 |
laser microdissected tumor tissues = 104 homogenized tumor tissues = 44 |
|
GSE4107 (GDS2609) |
Colonic mucosa | 22 pos = 12 neg = 10 |
colonic mucosa of healthy control = 12 colonic mucosa patients = 10 |
|
GSE15573 (GDS3794) |
Rheumatoid Arthritis (RA) Patients | 33 pos = 18 neg = 15 |
18 Rheumatoid Arthritis (RA) 15 Control |
| GSE5594 (GDS4824) | Prostate cancer Analysis of malignant and benign prostate tissues |
21 pos = 13 neg = 8 |
prostate cancer = 13 normal = 8 |