Table 3. Performance of CNN, LSTM and RF models for binary classification when random sequences from human genome are used as negative class data with test data.
Methods | Human | |||
---|---|---|---|---|
Acc | Se | Sp | MCC | |
2-mer | ||||
CNN | 0.9 | 0.85 | 0.96 | 0.84 |
LSTM | 0.56 | 0.09 | 0.96 | 0.01 |
RF | 0.75 | 0.77 | 0.72 | 0.49 |
4-mer | ||||
CNN | 0.91 | 0.88 | 0.99 | 0.85 |
LSTM | 0.89 | 0.82 | 0.96 | 0.79 |
RF | 0.79 | 0.77 | 0.81 | 0.58 |
8-mer | ||||
CNN | 0.91 | 0.85 | 0.98 | 0.83 |
LSTM | 0.91 | 0.84 | 0.99 | 0.84 |
RF | 0.82 | 0.77 | 0.86 | 0.64 |