Table 1.
SARS-CoV-2 genomes annotated in this study.
| No. | ID | Lineage/Nextclade | Mutations observed |
|---|---|---|---|
| 1 | Congo/UKT-001 | B.1/20A | (n = 8) – 5'UTR (241), NSP2 (Y537Y), NSP3 (F106F), NSP3 (F430S), NSP12b (P314L), NSP16 (N297D), S (D614G), ORF3a (Q57H) |
| 2 | Congo/UKT-002 | B.1/20A | (n = 9) – 5'UTR (241), NSP2 (N9N), NSP2 (Y537Y), NSP3 (F106F), NSP12b (P314L), NSP15 (Y88Y), S (D614G), ORF3a (Q57H), N (P6S) |
| 3 | Congo/UKT-004 | B.1/20A | (n = 9) – 5'UTR (241), NSP3 (F106F), NSP5 (D176D), NSP8 (I156I), NSP12b (P314L), NSP12b (N619N), S (S71F), S (S116S), S (D614G) |
| 4 | Congo/UKT-005 | B.1.273/20A | (n = 12) – 5'UTR (241), NSP2 (Y537Y), NSP3 (F106F), NSP3 (T763T), NSP12a (S6L), NSP12b (P314L), NSP14 (T113I), NSP15 (E145E), NSP15 (M271K), S (D614G), ORF3a (Q57H), ORF3a (V228A) |
| 5 | Congo/UKT-006 | B.1/20A | (n = 7) – 5'UTR (241), NSP2 (Y537Y), NSP3 (F106F), NSP12b (P314L), S (D614G), ORF3a (Q57H), N (P6S) |
| 6 | Congo/UKT-008 | B.1/20A | (n = 13) – 5'UTR (241), NSP2 (Y537Y), NSP3 (F106F), NSP3 (T763T), NSP3 (N1337N), NSP3 (T1607T), NSP12b (Y285Y), NSP12b (P314L), NSP13 (L297L), S (D614G), S (K1191N), ORF3a (Q57H), N (F274F) |
| 7 | Congo/UKT-009 | B.1/20A | (n = 8) – 5'UTR (241), NSP2 (Y537Y), NSP3 (F106F), NSP12b (P314L), S (D614G), ORF3a (Q57H), ORF8 (E19D), N (P365L) |
| 8 | Congo/UKT-013 | B.1/20C | (n = 11) – 5'UTR (241), NSP2 (Y537Y), NSP3 (F106F), NSP3 (K1804N), NSP4 (Y451Y), NSP12b (P314L), NSP13 (E261D), NSP13 (A454V), S (D614G), ORF3a (Q57H), N (T205I) |
| 9 | Congo/UKT-014 | B.1/20A | (n = 10) – 5'UTR (241), NSP2 (Y537Y), NSP3 (F106F), NSP5 (A94V), NSP10 (V108V), NSP12b (P314L), S (A348S), S (D614G), ORF3a (Q57H), N (S183Y) |
| 10 | Congo/UKT-015 | B.1/20A | (n = 14) – 5'UTR (241), NSP2 (Y537Y), NSP3 (F106F), NSP3 (S1038S), NSP6 (Y80Y), NSP6 (K270R), NSP10 (V108V), NSP12b (P314L), NSP15 (A81V), S (D614G), S (L828I), ORF3a (Q57H), N (P13L), N (Q181K) |
| 11 | Congo/UKT-016 | B.1.5/20C | (n = 10) – 5'UTR (241), NSP2 (Y537Y), NSP3 (K1804N), NSP5 (R217M), NSP12b (P314L), NSP13 (E261D), NSP13 (A454V), S (D614G), ORF3a (Q57H), N (T205I) |
Figures in parentheses: amino acid substitutions/position aligned with reference NC_045512.2- Wuhan-Hu-1.
NSP: non-structural protein; ORF: open reading frame; S: spike protein; N: nucleoprotein.