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. 2021 Mar 1;9:616908. doi: 10.3389/fbioe.2021.616908

TABLE 2.

Protein identification in the active gel lanes by LC-MSMS.

Band gel lane Protein ID Score Number of identified peptides Protein sequence coverage (%) Genome annotation
Lower gel band lane 323309 295 10 19 GH32 family/GH116 family
371227 204 8 16 GH32 family
376719 166 5 9 Multicopper oxidase
327740 165 6 16 GH43 family
383312 149 7 14 Glucooligosaccharide oxidase
387674 122 6 10 GH64 family
383083 120 5 16 GH17 family
417764 111 4 7 GH32 family
381496 62 5 11 Putative oxidoreductase
Upper gel band lane 384244 423 20 54 GMC oxidoreductase family
315441 274 12 42 GH2 family
400960 253 11 32 Uncharacterized protein
371227 185 10 34 GH32 family
385992 181 10 32 Amidase
323309 177 12 33 GH32 family/GH116 family
401322 99 7 18 GH20 family
373946 147 11 28 GH3 family
383654 145 11 31 Uncharacterized protein
401322 99 7 18 GH20 family

Protein bands were in situ digested and analyzed by LC-MSMS, and raw data was searched on the protein database as described in details in the “Materials and Methods” section. Search details and extensive description of the identified peptides are reported in Supplementary Material 2. The proteins belonging to the Gh32 family are highlighted in bold. Description of the glycosyl hydrolase (GH) families according to CAZypedia (http://www.cazypedia.org/): GH2: includes the following activities, β-galactosidases, β-glucuronidases, β-mannosidases, exo-β-glucosaminidases, and a mannosylglycoprotein endo-β-mannosidase; GH3: groups together exo-acting β-D-glucosidases, α-L-arabinofuranosidases, β-D-xylopyranosidases, N-acetyl-β-D-glucosaminidases, and N-acetyl-β-D-glucosaminide phosphorylases; GH17: includes two major groups of enzymes with related but distinct substrate specificities, namely, 1,3-β-D-glucan endohydrolases and 1,3;1,4-β-D-glucan endohydrolases; GH20: includes exo-acting β-N-acetylglucosaminidases, β-N-acetylgalactosamindase β-6-SO3-N-acetylglucosaminidases, and exo-acting lacto-N-biosidases; GH32: includes: enzymes able to hydrolyze fructose containing polysaccharides, i.e., inulinases, invertases, levanases, and other; GH43: includes the following major activities, α-L-arabinofuranosidases, endo-α-L-arabinanases (or endo-processive arabinanases) and β-D-xylosidases; GH64: laminaripentaose-producing β (1,3)-glucanases; GH116: includes enzymes with diverse specificities, including β-xylosidase, β-glucosidase, and N-acetylglucosaminidase; GMC oxidoreductase: glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase.