TABLE 2.
Band gel lane | Protein ID | Score | Number of identified peptides | Protein sequence coverage (%) | Genome annotation |
Lower gel band lane | 323309 | 295 | 10 | 19 | GH32 family/GH116 family |
371227 | 204 | 8 | 16 | GH32 family | |
376719 | 166 | 5 | 9 | Multicopper oxidase | |
327740 | 165 | 6 | 16 | GH43 family | |
383312 | 149 | 7 | 14 | Glucooligosaccharide oxidase | |
387674 | 122 | 6 | 10 | GH64 family | |
383083 | 120 | 5 | 16 | GH17 family | |
417764 | 111 | 4 | 7 | GH32 family | |
381496 | 62 | 5 | 11 | Putative oxidoreductase | |
Upper gel band lane | 384244 | 423 | 20 | 54 | GMC oxidoreductase family |
315441 | 274 | 12 | 42 | GH2 family | |
400960 | 253 | 11 | 32 | Uncharacterized protein | |
371227 | 185 | 10 | 34 | GH32 family | |
385992 | 181 | 10 | 32 | Amidase | |
323309 | 177 | 12 | 33 | GH32 family/GH116 family | |
401322 | 99 | 7 | 18 | GH20 family | |
373946 | 147 | 11 | 28 | GH3 family | |
383654 | 145 | 11 | 31 | Uncharacterized protein | |
401322 | 99 | 7 | 18 | GH20 family |
Protein bands were in situ digested and analyzed by LC-MSMS, and raw data was searched on the protein database as described in details in the “Materials and Methods” section. Search details and extensive description of the identified peptides are reported in Supplementary Material 2. The proteins belonging to the Gh32 family are highlighted in bold. Description of the glycosyl hydrolase (GH) families according to CAZypedia (http://www.cazypedia.org/): GH2: includes the following activities, β-galactosidases, β-glucuronidases, β-mannosidases, exo-β-glucosaminidases, and a mannosylglycoprotein endo-β-mannosidase; GH3: groups together exo-acting β-D-glucosidases, α-L-arabinofuranosidases, β-D-xylopyranosidases, N-acetyl-β-D-glucosaminidases, and N-acetyl-β-D-glucosaminide phosphorylases; GH17: includes two major groups of enzymes with related but distinct substrate specificities, namely, 1,3-β-D-glucan endohydrolases and 1,3;1,4-β-D-glucan endohydrolases; GH20: includes exo-acting β-N-acetylglucosaminidases, β-N-acetylgalactosamindase β-6-SO3-N-acetylglucosaminidases, and exo-acting lacto-N-biosidases; GH32: includes: enzymes able to hydrolyze fructose containing polysaccharides, i.e., inulinases, invertases, levanases, and other; GH43: includes the following major activities, α-L-arabinofuranosidases, endo-α-L-arabinanases (or endo-processive arabinanases) and β-D-xylosidases; GH64: laminaripentaose-producing β (1,3)-glucanases; GH116: includes enzymes with diverse specificities, including β-xylosidase, β-glucosidase, and N-acetylglucosaminidase; GMC oxidoreductase: glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase.