REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Deposited data | ||
Published paper and data | Dong et al., 2020 | dbGap accession number: phs000744 |
1,000 genomes | The 1000 genomes project consortium, 2015 | https://www.internationalgenome.org/data |
ExAC database | Lek et al., 2016 | https://gnomad.broadinstitute.org/ |
Exome variant server (EVS) | Exome Variant Server, NHLBI GO Exome Sequencing Project (ESP), Seattle, WA | https://evs.gs.washington.edu/EVS/ |
BRAVO | Program, 2018 | https://bravo.sph.umich.edu/freeze8/hg38/ |
Software and algorithms | ||
TrioDeNovo | Wei et al., 2014 | https://genome.sph.umich.edu/wiki/Triodenovo |
GATK | McKenna et al., 2010 | https://github.com/broadinstitute/gatk/ |
DeNovo protocol code | Scripts, intermediate files, and data generated for this protocol | https://github.com/jinlab-washu/de-novo-wes-star-protocol |