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. Author manuscript; available in PMC: 2022 Apr 1.
Published in final edited form as: J Genet Couns. 2020 Sep 16;30(2):394–405. doi: 10.1002/jgc4.1324

Table 2:

Variants identified in participants completing GT (n=20).

Variant Classification
Site Study Arm Study ID Birthplace Gene Variant Commercial Lab Classification Current ClinVar Classification
Tampa Intervention 03 Puerto Rico CDH1 c.1568A>G (p.Tyr523Cys) VUS VUS
09 Dominican Republic N/A Negative N/A N/A
11 Cuba MSH2 c.138C>G (p.His46Gln) VUS Likely Benign
16 Colombia MSH6 c.3757G>A (p.Val1253Ile) VUS VUS
23 Colombia BRIP1 c.1825A>G (p.Thr609Ala) VUS VUS
25 Cuba CHEK2 c.715G>T (p.Glu239*) Pathogenic Pathogenic
27 Puerto Rico N/A Negative N/A N/A
28 Colombia N/A Negative N/A N/A
Ponce Intervention 62 Puerto Rico N/A Negative N/A N/A
63 Puerto Rico N/A Negative N/A N/A
66 Puerto Rico N/A Negative N/A N/A
67 Puerto Rico ATM c.7740A>C (p.Arg2580Ser) VUS *Conflicting interpretations
69 Mainland US CHEK2 c.663C>G (p.Ile221Met) VUS VUS
72 Puerto Rico N/A Negative N/A N/A
73 Puerto Rico N/A Negative N/A N/A
77 Puerto Rico N/A Negative N/A N/A
Control 76 Puerto Rico NBN c.1999T>C (p.Ser667Pro) VUS *Conflicting interpretations
78 Puerto Rico MSH6 c.3071G>A (p.Arg1024Gln) VUS VUS
81 Puerto Rico N/A Negative N/A N/A
83 Puerto Rico N/A Negative N/A N/A

VUS = Variant of Uncertain Significance

N/A = not applicable

National Center for Biotechnology Information. ClinVar. Retrieved from https://www.ncbi.nlm.nih.gov/clinvar/. Accessed April 8, 2020.

*

Conflicting interpretations of pathogenicity on ClinVar, “likely benign” vs. “VUS”