Table 4.
Nucleotide and amino acid sequence identities (%) of TGEV HQ2016 strain compared with other 19 TGEV strains.
| ORF1a | ORF1b | S | ORF3a | ORF3b | E | M | N | ORF7 | |
|---|---|---|---|---|---|---|---|---|---|
| SHXB | 99.9/99.9 | 100.0/100.0 | 100.0/100.0 | 100.0/100.0 | 99.9/99.6 | 99.2/97.6 | 99.7/99.2 | 99.9/99.7 | 99.3/97.4 |
| Purdue P115 | 99.9/99.9 | 100.0/100.0 | 99.9/99.9 | 100.0/100.0 | 99.9/99.6 | 99.6/98.8 | 99.9/99.6 | 99.9/99.7 | 100.0/100.0 |
| PUR46-MAD | 100.0/100.0 | 100.0/100.0 | 100.0/100.0 | 100.0/100.0 | 100.0/100.0 | 99.6/98.8 | 99.9/99.6 | 100.0/100.0 | 100.0/100.0 |
| WH-1 | 100.0/100.0 | 100.0/100.0 | 100.0/100.0 | 100.0/100.0 | 99.9/99.6 | 99.6/98.8 | 99.9/99.6 | 100.0/100.0 | 100.0/100.0 |
| AYU | 99.9/99.9 | 100.0/100.0 | 100.0/100.0 | 100.0/100.0 | 100.0/100.0 | 99.6/98.8 | 99.7/99.2 | 100.0/100.0 | 100.0/100.0 |
| Purdue | 100.0/100.0 | 100.0/100.0 | 100.0/100.0 | 100.0/100.0 | 100.0/100.0 | 99.6/98.8 | 99.9/99.6 | 100.0/100.0 | 100.0/100.0 |
| HX | 99.9/99.9 | 100.0/100.0 | 99.9/99.9 | 100.0/100.0 | 100.0/100.0 | 99.6/98.8 | 100.0/100.0 | 100.0/100.0 | 100.0/100.0 |
| HE-1 | 99.9/99.7 | 99.8/99.7 | 99.9/99.8 | 100.0/100.0 | 100.0/100.0 | 98.8/98.8 | 99.5/98.5 | 99.9/99.7 | 99.8/98.7 |
| SC-Y | 99.5/99.2 | 99.8/99.8 | 99.7/99.5 | 100.0/100.0 | 99.9/99.6 | 99.6/98.8 | 99.7/99.2 | 99.9/99.7 | 100.0/100.0 |
| Z | 99.9/99.8 | 99.9/99.9 | 99.6/99.0 | 99.1/98.6 | 99.9/99.6 | 99.2/98.8 | 99.7/99.2 | 99.8/99.7 | 100.0/100.0 |
| HB | 99.9/99.9 | 100.0/100.0 | 99.7/99.4 | 100.0/100.0 | 99.9/99.6 | 99.6/98.8 | 99.7/99.2 | 100.0/100.0 | 100.0/100.0 |
| Mex145 | 99.9/99.8 | 99.9/99.9 | 99.7/99.2 | 99.5/98.6 | 99.9/99.6 | 99.2/98.8 | 99.7/99.2 | 99.9/99.7 | 100.0/100.0 |
| Virulent Purdue | 99.9/99.7 | 100.0/100.0 | 99.5/99.1 | 99.5/98.6 | 99.7/99.2 | 99.2/97.6 | 99.7/99.2 | 99.7/99.7 | 100.0/100.0 |
| AHHF | 99.5/99.5 | 100.0/100.0 | 98.9/98.6 | 100.0/100.0 | 99.9/99.6 | 99.6/98.8 | 99.7/99.2 | 100.0/100.0 | 100.0/100.0 |
| TS | 98.8/98.7 | 99.0/98.6 | 98.3/98.1 | 87.0/89.5 | 98.5/96.3 | 98.4/95.1 | 98.0/96.9 | 98.1/98.2 | 96.8/93.6 |
| JS2012 | 99.0/99.1 | 99.0/99.7 | 98.6/98.3 | 88.0/88.7 | 98.8/97.1 | 98.4/95.1 | 98.2/97.7 | 98.2/98.4 | 96.8/93.6 |
| Miller M6 | 99.0/99.1 | 99.1/99.6 | 98.3/97.1 | 88.0/88.3 | 98.9/97.5 | 98.0/93.9 | 98.2/97.7 | 98.2/98.4 | 96.6/93.6 |
| Attenuated H | 98.9/98.9 | 99.0/99.6 | 98.0/97.7 | 87.5/88.7 | 98.8/97.1 | 96.8/91.5 | 98.1/97.3 | 98.1/98.4 | 96.8/93.6 |
| H16 | 98.9/98.9 | 99.0/99.6 | 98.2/97.9 | 88.0/88.7 | 98.9/97.5 | 97.6/93.9 | 98.1/97.3 | 98.2/98.4 | 96.8/93.6 |