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. 2021 Mar 11;15:1111–1133. doi: 10.2147/DDDT.S292805

Table 5.

Residues of ACE2-RBD Complex Involved Within 4 Å Range of Its Interaction with Withanone Before and After Simulation Runs

Pre MD Post MD
H-Bond Alkyl Interaction Van der Waals H-Bond Alkyl Interaction Van der Waals
ACE2: D30
RBD: R403
ACE2:
K26, L29, V93, P389
ACE2:
T92, Q96
RBD:
E405, E406, R408, Q409, G416, K417
ACE2:
D30, N33, Q96
ACE2:
K26, L29, V93, A387, P389
ACE2:
E37, T92, A386, Q388, P390, R393
RBD:
R403, E406, K417

Note: The participating residues of the ACE2-RBD complex within 4 Å radial range of its interaction with withanone identified through 50 ns molecular dynamic (MD) simulation of aforementioned complex docked with withanone are provided along with the type of interactions involved.