Table 5.
Average sequencing and alignment statistics for individual boars.
| Samples | Treat. | Sample Number | Depth ± SD | Number of bp Sequenced ± SD | Breadth (bp Sequenced/Depth) ± SD | % of the % of Susscr11.1 Covered ± SD | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GBS | All | 11 | 33.81 | ± | 13.38 | 2746210261 | ± | 1651232585 | 72531345 | ± | 24303149 | 2.93 | ± | 0.98 |
| Hi | 4 | 34.92 | ± | 15.21 | 2979989907 | ± | 1926403257 | 75972199 | ± | 28862451 | 3.07 | ± | 1.16 | |
| Low | 3 | 35.98 | ± | 11.79 | 2875589615 | ± | 1539581798 | 75762826 | ± | 19130954 | 3.06 | ± | 0.77 | |
| UF | 4 | 31.09 | ± | 16.00 | 2415396101 | ± | 1887272897 | 66666880 | ± | 28630213 | 2.69 | ± | 1.15 | |
| GBS + MEDIP | All | 39 | 19.30 | ± | 2.35 | 128051103 | ± | 35431948 | 6721573 | ± | 1830176 | 0.27 | ± | 0.07 |
| Hi | 15 | 19.72 | ± | 2.79 | 136199403 | ± | 49129755 | 7021683 | ± | 2391520 | 0.28 | ± | 0.10 | |
| Low | 11 | 19.07 | ± | 1.38 | 117088079 | ± | 24901730 | 6219760 | ± | 1640964 | 0.25 | ± | 0.07 | |
| UF | 13 | 19.01 | ± | 2.55 | 127925623 | ± | 21202711 | 6799904 | ± | 1157695 | 0.27 | ± | 0.05 | |
GBS = genotyping by sequencing, MEDIP = methylated DNA immunoprecipitation technique.