Table 3.

GO terms enriched in YZ during infection by B. rouxiae.

Description	Ontology	Number of Genes	False Discovery Rate
defense response	Biological process	68	1.1 × 10−6
response to organonitrogen compound	Biological process	26	5.0 × 10−6
response to biotic stimulus	Biological process	61	2.7 × 10−5
regulation of defense response	Biological process	32	2.7 × 10−5
response to chitin	Biological process	23	2.7 × 10−5
regulation of response to stress	Biological process	32	2.7 × 10−5
response to nitrogen compound	Biological process	34	2.8 × 10−5
immune system process	Biological process	44	2.9 × 10−5
response to stress	Biological process	138	4.7 × 10−5
cell death	Biological process	32	0.000
regulation of innate immune response	Biological process	25	0.000
innate immune response	Biological process	40	0.000
regulation of immune response	Biological process	25	0.000
response to external biotic stimulus	Biological process	54	0.000
regulation of immune system process	Biological process	25	0.000
immune response	Biological process	40	0.000
response to other organism	Biological process	54	0.000
regulation of cell death	Biological process	24	0.000
response to external stimulus	Biological process	70	0.000
regulation of response to stimulus	Biological process	42	0.000
response to stimulus	Biological process	218	0.000
response to oxygen-containing compound	Biological process	78	0.000
response to chemical	Biological process	125	0.000
programmed cell death	Biological process	27	0.001
regulation of programmed cell death	Biological process	22	0.001
negative regulation of cell death	Biological process	15	0.001
negative regulation of programmed cell death	Biological process	15	0.001
host programmed cell death induced by symbiont	Biological process	23	0.002
plant-type hypersensitive response	Biological process	23	0.002
cell communication	Biological process	88	0.002
salicylic acid mediated signaling pathway	Biological process	17	0.002
response to endogenous stimulus	Biological process	63	0.002
cellular response to salicylic acid stimulus	Biological process	17	0.003
response to salicylic acid	Biological process	19	0.003
response to acid chemical	Biological process	48	0.005
cellular response to stress	Biological process	51	0.005
response to fungus	Biological process	24	0.005
regulation of plant-type hypersensitive response	Biological process	18	0.006
regulation of cellular response to stress	Biological process	18	0.006
response to organic substance	Biological process	82	0.007
cellular response to acid chemical	Biological process	26	0.008
respiratory burst involved in defense response	Biological process	10	0.009
endoplasmic reticulum unfolded protein response	Biological process	12	0.009
cellular response to unfolded protein	Biological process	12	0.009
cellular response to topologically incorrect protein	Biological process	12	0.009
response to unfolded protein	Biological process	12	0.009
multi-organism process	Biological process	61	0.009
signal transduction	Biological process	75	0.010
respiratory burst	Biological process	10	0.010
protein targeting to membrane	Biological process	18	0.010
single organism signaling	Biological process	75	0.015
signaling	Biological process	75	0.016
response to organic cyclic compound	Biological process	27	0.025
protein localization to membrane	Biological process	18	0.026
establishment of protein localization to membrane	Biological process	18	0.026
cellular response to stimulus	Biological process	98	0.036
defense response to other organism	Biological process	33	0.046
phosphotransferase activity, alcohol group as acceptor	Molecular function	93	0.001
kinase activity	Molecular function	103	0.003
protein kinase activity	Molecular function	81	0.003
protein serine/threonine kinase activity	Molecular function	60	0.017
catalytic activity	Molecular function	471	0.017