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D-GENIES synteny plots of main chromosome scaffolds for three dog genome assemblies against CanFam_Bas. In each case, CanFam_Bas (China v1.2) is on the x-axis and the comparison assembly on the y-axis. Gridlines demarcate scaffolds. Thick black lines indicate regions of genomic alignment. a. All-by-all main chromosome scaffold alignments with (i) CanFam_GSD, (ii) CanFam_3.1, and (iii) Wags. b. Main chromosome 9 scaffold alignment with (i) CanFam_GSD, (ii) CanFam_3.1, and (iii) Wags
