REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
anti-IgG-APC | BD Biosciences | Cat# 550931; RRID: AB_398478 |
anti CD19-FITC | BD Biosciences | Cat# 340864; RRID: AB_400152 |
anti-human Fc-HRP | Sigma-Aldrich | Cat# A0170; RRID: AB_257868 |
Bacterial and virus strains | ||
SARS-CoV-2 USA-WA1/2020 | Harcourt et al., 2020 | N/A |
Biological samples | ||
PBMC and plasma from SARS-CoV-2 convalescent donors | This paper | N/A |
Chemicals, peptides, and recombinant proteins | ||
Recombinant SARS-CoV-2 spike (“S2P”) | This paper | N/A |
Recombinant SARS-CoV-2 RBD | This paper | N/A |
TEV protease | This paper | N/A |
BirA ligase | This paper | N/A |
Streptavidin-PE | Invitrogen | Cat# S866 |
Ni Sepharose Excel | GE Healthcare | Cat# 17-3712-02 |
Human ACE2-Fc fusion protein | This study | N/A |
MabSelect SuRE Resin | GE Healthcare | Cat# 97067-944 |
Kifunensine | Sigma-Aldrich | Cat# K1140 |
Peg/Ion Screen | Hampton | HR2-126 |
Peg/Ion 2 Screen | Hampton | HR2-098 |
Pierce Protein G Ultra Link Resin | Thermo Fisher Scientific | Cat# 53126 |
PEGRx 1 Screen | Hampton | HR2-082 |
PEGRx 2 Screen | Hampton | HR2-084 |
Critical commercial assays | ||
SuperScriptTM III reverse transcriptase | Invitrogen | Cat# 18080044 |
Expifectamine 293 Transfection Kit | Thermo Fisher Scientific | Cat# A14525 |
Lipofectamine 3000 | Thermo Fisher Scientific | Cat# L3000150 |
Deposited data | ||
Crystal structure of C1A-B3/RBD complex | This paper | PDB: 7KFW |
Crystal structure of C1A-F10/RBD complex | This paper | PDB: 7KFY |
Crystal structure of C1A-C2/RBD complex | This paper | PDB: 7KFX |
Crystal structure of C1A-B12/RBD complex | This paper | PDB: 7KFV |
Experimental models: Cell lines | ||
HEK293T cells | ATCC | CRL-11268; RRID:CVCL_1926 |
HEK293T-hACE2 | Michael Farzan | N/A |
HEKS293S Gnti−/− cells | ATCC | CRL-3022; RRID:CVCL_A785 |
Vero E6 C1008 cells | ATCC | ATCC CRL-1586; RRID:CVCL_0574 |
Expi293F cells | ThermoFisher | Cat#A14527; RRID: CVCL_D615 |
Expi293F SARS-CoV-2 S2P-His6 | Bing Chen | N/A |
Oligonucleotides | ||
Primers for B cell receptor nested PCR and sequencing | Scheid et al., 2011 | N/A |
Recombinant DNA | ||
SARS-CoV-2 S2P | This paper | N/A |
CR3022 Fab | Galit Alter | GenBank: DQ168569.1 and DQ168570.1 |
4A8 | Chi et al., 2020 | Sequence from PDB: 7C2L |
B38 | Wu et al., 2020 | Sequence from PDB: 7BZ5 |
CC12.1 | (Yuan et al., 2020a) | Sequence from PDB: 6XC2 |
REGN10933 | Hansen et al., 2020 | Sequence from PDB: 6XDG |
REGN10987 | Hansen et al., 2020 | Sequence from PDB: 6XDG |
Human ACE2 | Michael Farzan, Hyeryun Choe | N/A |
Codon optimized SARS-CoV-2 S pCAGGS | This paper | N/A |
Codon optimized SARS-CoV-2 S D614G pCAGGS | This paper | N/A |
Codon optimized SARS-CoV-2 S D614G N439K pCAGGS | This paper | N/A |
Codon optimized SARS-CoV-2 S D614G Q493K pCAGGS | This paper | N/A |
Codon optimized SARS-CoV-2 S D614G Q493R pCAGGS | This paper | N/A |
Codon optimized SARS-CoV-2 S day 146∗ pCAGGS | This paper | N/A |
Codon optimized SARS-CoV-2 day 152 pCAGGS | This paper | N/A |
VSV G pCAGGS | Radoshitzky et al., 2007 | N/A |
psPAX2 | Didier Trono | Addgene Cat#63592 |
lentiCas9-EGFP | Chen et al., 2015 | Addgene Cat#63592 |
Software and algorithms | ||
IMGT/V-QUEST | http://www.imgt.org | N/A |
ForteBio data analysis software | ForteBio | N/A |
FlowJo version 10.6.2 | FlowJo | https://www.flowjo.com; RRID:SCR_008520 |
XDS build 202 00131 | Kabsch, 2010 | https://xds.mr.mpg.de/;RRID:SCR_015652 |
AIMLESS v0.5.32 | Evans and Murshudov, 2013 |
http://legacy.ccp4.ac.uk/html/aimless.html; RRID:SCR_015747 |
Phaser v2.8.3 | McCoy et al., 2007 | https://www.phenix-online.org/documentation/reference/phaser.html; RRID:SCR_014219 |
Phenix v1.18.2-3874 | Adams et al., 2010 | https://www.phenix-online.org; RRID: SCR_014224 |
Buster v2.10.3 | Bricogne et al., 2017 | https://www.globalphasing.com/buster/; RRID: SCR_015653 |
Prism v8.4.3 | GraphPad Software | https://www.graphpad.com:443/; RRID: SCR_002798 |
O v15.0 | Jones et al., 1991 | N/A |
Other | ||
anti-CD20 MicroBeads | Miltenyi Biotec | Cat# 130-091-104 |
MACS LS column | Miltenyi Biotec | Cat# 130-042-401 |
anti-FLAG M2 Affinity Gel | Sigma-Aldrich | Cat# A2220; RRID: AB_10063035 |
Protein G UltraLink | Thermo Fisher Scientific | Cat#: 53125 |
MabSelect SuRE Resin | GE Healthcare | Cat# 17547401 |
Streptavidin biosensor | ForteBio | Cat# 18-5020 |
MoFlo Astrios EQ Cell Sorter | Beckman Coulter | N/A |
iQue Screener PLUS | Intellicyt | N/A |