Table 3.

Patterns of INDELs and their associated mechanisms of origin.

INDEL type	Example	Mechanism	Frequency*
HR - deletion	GCATAAAaaAAAGC	NAHR	756 411
HR - insertion	CACAAAAAAAAAAAAGCTAC	NAHR	521 002
TR - mixed	ACACACacacACACACACAC	NAHR	118 432
Non-repetitive	TAGCACagtGACTTCACAGCCTG	NHEJ-like	28 389
Long Insertion	CGGCTAGACCAGGTACAGTCA	MMEJ	32 666
Long Deletion	GCacactgacacgacactgacacactgaaA	MMEJ	31 712

HR, Homopolymer run; TR, Tandem Repeat.

= Deletion

= Insertion

*For all the 34 TcI genomes compared against Sylvio X10/1.