Table 4.

Validation parameters for built 3D protein structures determined using ERRAT, RAMPAGE, PROQ, and QMEAN server

Gene name	ERRAT analysis	RAMPAGE analysis			PROQ analysis		QMEAN score	Z score
	Overall quality factor	Number of residues in favored region (%)	Number of residues in allowed region (%)	Number of residues in outlier region (%)	LG score	Max sub
recA	97.377	97.0	2.1	0.9	4.450	0.402	0.96	− 7.83
dnaK	69.7952	95.2	2.8	2.0	4.846	0.335	− 0.67	− 11.33
relA	95.5056	96.1	3.0	0.9	3.041	0.291	− 2.97	− 7.3
spoT	90.1099	97.9	1.5	0.6	3.626	0.311	− 1.33	− 8.24
uspA	100	99.3	0.7	0.0	4.766	0.485	0.03	− 7.42
soxS	98.9796	98.1	1.9	0.0	1.933	0.268	− 0.04	− 6.03
mdtD	97.9798	96.6	2.6	0.8	3.294	0.291	− 2.67	− 3.45
acrA	87.8981	97.6	1.5	0.9	2.472	0.307	− 0.57	− 9.42
tolC	96.6581	98.8	0.9	0.2	1.517	0.390	0.17	− 7.92
GNAT	95.5975	98.2	1.2	0.6	4.456	0.559	0.05	− 6.43
RHH	100	95.4	3.9	0.7	1.931	0.261	− 0.79	− 1.05
vapC	83.3333	100.0	0.0	0.0	0.607	0.079	− 1.71	− 1.16
vapB	91.0569	96.9	3.1	0.0	5.358	0.570	− 1.62	− 6.49
relE	50	94.3	4.6	1.1	2.288	0.380	0.04	− 4.47
relB	98.5294	100.0	0.0	0.0	1.752	0.305	− 0.33	− 1.09