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. Author manuscript; available in PMC: 2022 Feb 1.
Published in final edited form as: Bone. 2020 Nov 19;143:115763. doi: 10.1016/j.bone.2020.115763

Table 2.

Hydrogen bond occupancies and frame counts for native and deamidated sidechains at Asn1052 of α1(I) and Asn983 of α2(I).

Acceptor/Donor Atoma Trailing Strand Middle Strand Leading Strand
Frames Occupancy Frames Occupancy Frames Occupancy
N OD1 20781 0.83 21762 0.87 31502 1.26
N HD21 9753 0.39 9921 0.40 9129 0.37
N HD22 11447 0.46 11256 0.45 12395 0.50

n(D) OD1 57158 2.29 49515 1.98 61687 2.47
n(D) OD2 47961 1.92 54397 2.18 64314 2.57
a

Panel B in Fig. 4 shows the locations of hydrogen bonding

b

The frames count is the number of instances in which the hydrogen bonding was found during the trajectory. Occupancy is defined as the percentage one hydrogen bond donor is within a distance of 3.0 Å and an angle cutoff of 135° of one hydrogen bond acceptor. Occupancies >1 occur when an atom hydrogen bonds to multiple waters at the same time satisfying the above criteria.