Table 2.
Proportion (%) of transposable elements in rodents
| Class | Clade/superfamily | Hamster | Mouse | Rat |
|---|---|---|---|---|
| SINE | B1 | 3.3 | 2.32 | 1.56 |
| B2 | 1.96 | 2.16 | 2.1 | |
| B4 | 2.6 | 2.13 | 2.12 | |
| ID | 0.34 | 0.17 | 0.72 | |
| MIR | 0.72 | 0.56 | 0.53 | |
| other SINE | 0.24 | 0.01 | 0.01 | |
| LINE | L1 | 16.22 | 19.75 | 18.94 |
| L2 | 0.57 | 0.43 | 0.41 | |
| other LINE | 0.13 | 0.1 | 0.1 | |
| LTR | ERV1 | 0.64 | 0.74 | 0.99 |
| ERVK | 5.02 | 5.02 | 3.81 | |
| ERVL | 5.55 | 5.9 | 5.26 | |
| other LTR | 0.87 | 0.44 | 0.04 | |
| DNA | hAT | 0.98 | 0.82 | 0.81 |
| TcMar | 0.27 | 0.22 | 0.21 | |
| other DNA | 0.03 | 0.03 | 0.03 | |
| Other TE | 0.38 | 0.29 | 0.27 | |
| Unknown TE | 0.09 | 0.12 | 0.79 | |
| Total | 39.9 | 41.22 | 38.7 | |