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. 2021 Mar 18;10(3):giab010. doi: 10.1093/gigascience/giab010

Table 2:

Variables names, explanations, and specifications measured for all 4,959 trees and all 194 GenTree sites

Variable name Variable explanation Specification
GenTree Platform metadata
m01.spec Species abbreviations Abies Alba (AA), Betula pendula (BP), Fagus sylvatica (FS), Picea abies (PA), Pinus cembra (PC), Pinus halepensis (PH), Pinus nigra (PN), Populus nigra (PO), Pinus pinaster (PP), Pinus sylvestris (PS), Quercus petraea (QP), Taxus baccata (TB)
m02.country Country abbreviations Isocode 6133–2; Austria (AT), Switzerland (CH), Germany (DE), Spain (ES), Finland (FI), France (FR), Great Britain (GB), Greece (GR), Italy (IT), Lithuania (LT), Norway (NO), Sweden (SE)
m03.site.num Site numbers Running numbers of sites per species 01–24
m04.site.id Complete site-ID per species Merger of m01–m03
m05.tree.num Tree numbers Running numbers within sites 01–25
m06.tree.id Complete tree ID Merger of m01–m03, m05
m07.trial.name Site name
m08.lat Latitude Decimal degrees, WGS84
m09.lon Longitude Decimal degrees, WGS84
GenTree Platform phenotypes
p01.height Height Tree height, m
p02.dbh DBH Diameter at breast height, cm
p03.bark Bark thickness mean Mean value of bark thickness, cm
p04.trunk Trunk straightness/flexuosity 5: Absolutely straight; 4: fairly straight (in 1 direction slightly crooked); 3: slight to moderate bend in different directions; 2: moderate or strong bends; 1: no straight stem
p05.branch Branch angle 1: <23° (steep); 2: 23–45°; 3: 45–67°; 4: 67–90° (plain); 5: >90°
p06.fork Forking index 1: Fork at the lower third of tree height; 2: fork at middle third; 3: fork at upper third; 4: no fork—multiplied by 10 and then divided by the number of stems
p07.canopy.1 Canopy projection REP 1 Crown diameter projection, m
p08.canopy.2 Canopy projection REP 2 Crown diameter projection, m
p09.crown.ellipse Crown ellipse Area of an ellipse (di/2)*(dj/2)*π, m2
p10.crown.round Crown size As some only have 1 diameter, round areas with the mean diameter [(di+dj)/2]2*π, m2
p11.regeneration Natural regeneration 1: Absent; 2: scattered; 3: groups; 4: abundant
p12.fruit.mean Fruit/cone number Number of fruits
p13.basal.area
GenTree Platform in situ environmental measurements
e01.plant.cover Total plant cover 1: None; 2: little (5–20%); 3: low (20–40%); 4: medium (40–60%); 5: high (60–80%); 6: very high (80–95%); 7: full cover (>95%)
e02.comp.index.a Competition index A CI assessed following Canham et al. [23], and multi-stems as the sum
e03.comp.index.b Competition index B CI assessed following Canham et al. [23], and multi-stems assessing the sum of basal areas and then the DBH
e04.comp.index.c Competition index C CI assessed following Lorimer [24], and multi-stems as the sum
e05.comp.index.d Competition index D CI assessed following Lorimer [24], multi-stems assessing the sum of basal areas and then the DBH
e06.status Dominant, co-dominant
e07.elevation Elevation of the tree Meters above sea level
e08.slope Slope at the tree level Slope in degrees
e09.aspect Aspect at the tree level 0–360°
e10.soil.depth Mean soil depth Mean of 3 measures (measurement to a maximum depth of 60 cm)
e11.stone.content Mean stone content Mean of 3 measures: 1: none; 2: little (5–20%); 3: low (20–40%); 4: medium (40–60%); 5: high (60–80%); 6: very high (80–95%); 7: full cover (>95%)
e12.rock.cover Total rock cover 1: None; 2: little (5–20%); 3: low (20–40%); 4: medium (40–60%); 5: high (60–80%); 6: very high (80–95%); 7: full cover (>95%)