Table 1. Mouse RPE/choroid cell types identified by scRNAseq.
Cluster number | Cell type | Cell number | Percentage of total | Average UMIs/cell | Average genes/cell | Average UMIs/gene | |||||
---|---|---|---|---|---|---|---|---|---|---|---|
C57BL/6J mice | B6129PF1/J mice | C57BL/6J mice | B6129PF1/J mice | C57BL/6J mice | B6129PF1/J mice | C57BL/6J mice | B6129PF1/J mice | C57BL/6J mice | B6129PF1/J mice | ||
1 | RPE | 402 | 445 | 10.1 | 11.9 | 4,860 | 7,514 | 1,468 | 1,911 | 3.02 | 3.51 |
2 | ECs | 405 | 366 | 10.1 | 9.8 | 4,550 | 5,151 | 1,920 | 2,090 | 2.18 | 2.32 |
3 | ECs | 550 | 435 | 13.8 | 11.7 | 4,847 | 5,570 | 1,943 | 2,139 | 2.28 | 2.42 |
4 | ECs | 74 | 63 | 1.9 | 1.7 | 4,749 | 5,196 | 1,894 | 2,025 | 2.26 | 2.37 |
5 | Stromal cells | 776 | 797 | 19.4 | 21.4 | 3,255 | 3,723 | 1,524 | 1,645 | 2.09 | 2.21 |
6 | Stromal cells | 610 | 552 | 15.3 | 14.8 | 3,171 | 3,796 | 1,491 | 1,681 | 2.07 | 2.21 |
7 | Stromal cells | 223 | 229 | 5.6 | 6.1 | 3,695 | 4,518 | 1,684 | 1,894 | 2.14 | 2.32 |
8 | Stromal cells | 158 | 166 | 4.0 | 4.5 | 2,995 | 3,944 | 1,391 | 1,661 | 2.13 | 2.33 |
9 | Smooth muscle cells | 476 | 400 | 11.9 | 10.7 | 3,863 | 4,769 | 1,583 | 1,814 | 2.38 | 2.58 |
10 | Melanocytes | 28 | 20 | 0.7 | 0.5 | 3,913 | 5,008 | 1,621 | 1,847 | 2.32 | 2.59 |
11 | Hematopoietic cells | 140 | 116 | 3.5 | 3.1 | 4,573 | 4,960 | 1,528 | 1,496 | 2.83 | 3.19 |
12 | Schwann cells | 108 | 106 | 2.7 | 2.8 | 2,525 | 2,835 | 1,306 | 1,418 | 1.90 | 1.96 |
13 | Schwann cells | 46 | 32 | 1.2 | 0.9 | 2,606 | 3,532 | 1,227 | 1,495 | 2.08 | 2.31 |
Total | 3,996 | 3,727 |
Data are from C57BL/6J and B6129PF1/J mice (pooled cells from one male and one female for each strain).