Table 1.
Omic count | Omic type | Omic data | Feature size | Sample size () | Feature & Data values (unit) | Source |
---|---|---|---|---|---|---|
mono-omics | Genomics (G) | CNV | 24,776 | 481 | Gene name & Gistic2 copy number | 41 |
Transcriptomics (T) | mRNA | 12,043 | 481 | Gene name & log2(affy RMA) | 40 | |
RNAseq | 20,530 | 292 | Gene name & pan-cancer normalized log2(norm_count+1) | 42 | ||
Epigenomics (E) | DNA methylation | 27,579 / 21,675 | 481/886 | CPG probe identifier or CG number & Beta value | 43,44 | |
Di-omics | G + T | CNV + mRNA | 36,819 | 481 | A combination of the respective mono-omics values | |
CNV+ RNAseq | 45,306 | 292 | ||||
E + T | DNA methylation + mRNA | 39,622 | 481 | |||
DNA methylation + RNAseq | 48,109 | 292 | ||||
G + E | CNV+ DNA methylation | 52,355 | 481 | |||
Tri-omics | G + E + T | CNV+ DNA methylation + mRNA | 64,398 | 481 | ||
CNV+ DNA methylation + RNAseq | 72,885 | 292 |
Sample size after intersection.
Generated through the concatenation of respective mono-omics datasets.