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. Author manuscript; available in PMC: 2021 Mar 19.
Published in final edited form as: Cell Rep. 2019 Aug 20;28(8):2140–2155.e6. doi: 10.1016/j.celrep.2019.07.059

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Anti-PD-L1 (clone 10F.9G2) Biolegend Cat No. 124313
Anti-MHC class I H-2Db (clone KH95) Biolegend Cat No.111518
Anti-MHC class I H-2Kb (clone AF6–88.5) BD Cat No. 561072
Anti-mouse PD-1 (clone RMP1.14) BioXcell Cat No. BE0146
Anti-mouse PD-L1 (clone 10F.9G2) BioXcell Cat No. BE0101
Primary antibody against mouse mesothelin (clone B35) MBL Cat No. D233–3
Goat anti-rat secondary antibody conjugated to AF488 Thermo Fisher Cat No. A-11006
Agonistic anti-mouse anti-CD40 (clone FGK45) BioXcell BE0016–2
Fc block (anti-CD16/32) Tonbo 70-1061-U100
Anti-CD45 (clone 30-F11) Biolegend 103147
Anti-CD8a (clone 53–6.7) Thermo Fisher 45-0081-82
Anti-CD44 (clone IM7) BD 564392
Anti-CD62L (clone MEL-14) Biolegend 104406
Anti-PD-1 (CD274, clone J43) Thermo Fisher 25-9985-82
Anti-KLRG1 (clone 2F1) Biolegend 138408
Anti-Tim-3 (clone RMT3-23) Biolegend 119725
Anti-Lag-3 (CD223, clone C9B7W) Biolegend 125227
Anti-CD19 (clone 1D3) BD 563557
Anti-F4/80 (clone T45-2342) BD 565614
Anti-CD11c (clone N418) BD 744180
Ghost dye live-dead in BV510 Tonbo 13-0870-T500
Ghost dye live-dead in APCef780 Tonbo 13-0865-T500
Anti-IFN-gamma (clone XMG1.2) Biolegend 505810
Anti-TIGIT (clone 1G9) Biolegend 372706
Anti-CD69 (clone H1.2F3) Biolegend 104506
Anti-Ki67 (clone 16A8) Biolegend 652418
Goat anti-mouse PD-L1 R&D systems AF1019-SP
Rat anti-mouse CD31 BD 550274
Rabbit anti-mouse Lyve-1 Novus NB600–1008
Anti-panCK-FITC (clone C-11) Sigma-Aldrich F3418
Anti-goat AF647 Jackson Immunoresearch 705-605-147
Anti-rat AF546 Invitrogen A-11081
Anti-rabbit AF647 Life Technologies A27040
Anti-F4/80 (clone BM8) Tonbo 4801-U100
Anti-αSMA (clone 1A4) Thermo FIsher 14-9760-82
Rabbit anti-mouse Ly6G BD 551459
Anti-LFA-1 (clone H155–78) Biolegend 141008
Chemicals, Peptides, and Recombinant Proteins
FTY720 Cayman Chemical Cat No. 10008639
D-Luciferin Gold Bio LUCK-100
Poly I:C Sigma-Aldrich P1530
Recombinant mouse IFNγ R&D systems 485-MI-100
Click beetle red luciferase derived peptides Genscript N/A
Streptavidin R-PE Invitrogen S866
Red blood cell lysis buffer GIBCO A1049201
DAPI Prolong Gold Life Technologies P36931
Amphotericin B GIBCO 15290018
Penicillin/streptomycin GIBCO 10378016
Dextrose Fisher Scientific D15–500
L-glutamine Thermo Fisher 25030081
Blasticidin Thermo Fisher A1113903
Puromycin Thermo Fisher A1113803
EDTA Thermo Fisher 15575020
Collagenase IV Sigma Aldrich V900893
NEAA GIBCO 11-140-050
Betamercaptoethanol GIBCO M6250
D-PBS (no phenol red) GIBCO 14040133
Golgiplug BD 555029
OCT Tissue-Tek Electron Microscopy Sciences 6255001
Acetone Sigma Aldrich V800023
Critical Commercial Assays
BD fixation kit BD 554714
Foxp3 fixation and permeabilization kit Tonbo TNB-0607-KIT
Effectene kit QIAGEN 301425
QIAgen RNeasy kit QIAGEN 74104
SYBR Green master mix Thermo Fisher 4344463
High Capacity RNA to cDNA kit Thermo Fisher 438706
Experimental Models: Cell Lines
KPC PDA cells and clones This paper N/A
Plat-E cells CELL BIOLABS RV-101
Experimental Models: Organisms/Strains
C57BL/6J KPC mice Fred Hutchinson Cancer Research Center Stromnes et al., 2015
C57BL/6J mice Jackson laboratories 000664
Oligonucleotides (primers)
Msln R 5’ TGG ACC TTG TGA ACG AGA TTC 3’ This paper IDT
Msln F 5’ TGG ATC AGG GAC TCA GGA TAG 3’ This paper IDT
H2-Db R 5’ GGT GAC TTC ACC TTT AGA TCT GGG 3’ Lv, D. et. al., 2015 IDT
H2-Db F 5’ AGT GGT GCT GCA GAG CAT TAC AA 3’ Lv, D. et. al., 2015 IDT
H2-Kb R 5’ GGT GAC TTT ATC TTC AGG TCT GCT 3’ This paper IDT
H2-Kb F 5’ GCT GGT GAA GCA GAG AGA CTC AG 3’ This paper IDT
Tap1 R 5’ AGT TCA GGC AGA AGT TGG AAG 3’ This paper IDT
Tap1 F 5’ GCC CAG GTA CAG AAT TCC C 3’ This paper IDT
Lmp2 R 5’ GGT TAT GTG GAC GCA GCT TA 3’ This paper IDT
Lmp2 F 5’ GGT GAC CAG GTA GAT GAC AC 3’ This paper IDT
Lmp7 R 5’ GCT GCT TTC CAA CAT GAT GC 3’ This paper IDT
Lmp7 F 5’ CCG AGT CCC ATT GTC ATC TAC 3’ This paper IDT
ATP5b R 5’ CAA TGC AGG AAA GGA TCA CCA 3’ This paper IDT
ATP5b F 5’ CAT CCA AAT GGG CAA AGG TG 3’ This paper IDT
Recombinant DNA
CBR-GFP retroviral vector Stromnes et al., 2015; Smith et al., 2017 N/A
GFP-only retroviral vector This report N/A
Ovalbumin-GFP retroviral vector This report N/A
Software and Algorithms
NetMHC version 4.0 http://cbs.dtu.dk/services/NetMHC/ N/A
SYFPEITHI http://www.syfpeithi.de/bin/MHCServer.dll/EdiptopePrediction.htm N/A
BIMAS https://bimas.cit.nih/gov/ N/A
FlowJo version 10 FlowJo N/A
FACS Diva BD N/A
GraphPad Prism N/A
IVIS100 with Living Image Software Xenogen N/A
Imaris9.1.0 Bitplane N/A
Vevo 2100 Visual Sonics Fujifilm N/A
Real Touch CFX96 PCR detection system BioRad N/A
Other
DMEM GIBCO 11960051
FCS GIBCO 26140079
Cell counting beads Sigma P7458
Magnetic beads conjugated to PE Miltenyi 130-048-801
Matrigel Discovery Labware 08-774-552
4.0 Sutures Ethicon 1611G
5.0 Sutures Ethicon 8580H
Magnetic beads conjugated to APC Miltenyi 130-090-855
LS Columns Miltenyi 130-042-401
QuadroMACS separator Miltenyi 130-090-076
CB101–109-H-2Db tetramer This report N/A
SIINFEKL-H-2K-b tetramer - APC http://tetramer.yerkes.emory.edu/reagents/class-I-mhc N/A