Antibodies |
|
|
Anti-PD-L1 (clone 10F.9G2) |
Biolegend |
Cat No. 124313 |
Anti-MHC class I H-2Db (clone KH95) |
Biolegend |
Cat No.111518 |
Anti-MHC class I H-2Kb (clone AF6–88.5) |
BD |
Cat No. 561072 |
Anti-mouse PD-1 (clone RMP1.14) |
BioXcell |
Cat No. BE0146 |
Anti-mouse PD-L1 (clone 10F.9G2) |
BioXcell |
Cat No. BE0101 |
Primary antibody against mouse mesothelin (clone B35) |
MBL |
Cat No. D233–3 |
Goat anti-rat secondary antibody conjugated to AF488 |
Thermo Fisher |
Cat No. A-11006 |
Agonistic anti-mouse anti-CD40 (clone FGK45) |
BioXcell |
BE0016–2 |
Fc block (anti-CD16/32) |
Tonbo |
70-1061-U100 |
Anti-CD45 (clone 30-F11) |
Biolegend |
103147 |
Anti-CD8a (clone 53–6.7) |
Thermo Fisher |
45-0081-82 |
Anti-CD44 (clone IM7) |
BD |
564392 |
Anti-CD62L (clone MEL-14) |
Biolegend |
104406 |
Anti-PD-1 (CD274, clone J43) |
Thermo Fisher |
25-9985-82 |
Anti-KLRG1 (clone 2F1) |
Biolegend |
138408 |
Anti-Tim-3 (clone RMT3-23) |
Biolegend |
119725 |
Anti-Lag-3 (CD223, clone C9B7W) |
Biolegend |
125227 |
Anti-CD19 (clone 1D3) |
BD |
563557 |
Anti-F4/80 (clone T45-2342) |
BD |
565614 |
Anti-CD11c (clone N418) |
BD |
744180 |
Ghost dye live-dead in BV510 |
Tonbo |
13-0870-T500 |
Ghost dye live-dead in APCef780 |
Tonbo |
13-0865-T500 |
Anti-IFN-gamma (clone XMG1.2) |
Biolegend |
505810 |
Anti-TIGIT (clone 1G9) |
Biolegend |
372706 |
Anti-CD69 (clone H1.2F3) |
Biolegend |
104506 |
Anti-Ki67 (clone 16A8) |
Biolegend |
652418 |
Goat anti-mouse PD-L1 |
R&D systems |
AF1019-SP |
Rat anti-mouse CD31 |
BD |
550274 |
Rabbit anti-mouse Lyve-1 |
Novus |
NB600–1008 |
Anti-panCK-FITC (clone C-11) |
Sigma-Aldrich |
F3418 |
Anti-goat AF647 |
Jackson Immunoresearch |
705-605-147 |
Anti-rat AF546 |
Invitrogen |
A-11081 |
Anti-rabbit AF647 |
Life Technologies |
A27040 |
Anti-F4/80 (clone BM8) |
Tonbo |
4801-U100 |
Anti-αSMA (clone 1A4) |
Thermo FIsher |
14-9760-82 |
Rabbit anti-mouse Ly6G |
BD |
551459 |
Anti-LFA-1 (clone H155–78) |
Biolegend |
141008 |
Chemicals, Peptides, and Recombinant Proteins |
|
|
FTY720 |
Cayman Chemical |
Cat No. 10008639 |
D-Luciferin |
Gold Bio |
LUCK-100 |
Poly I:C |
Sigma-Aldrich |
P1530 |
Recombinant mouse IFNγ |
R&D systems |
485-MI-100 |
Click beetle red luciferase derived peptides |
Genscript |
N/A |
Streptavidin R-PE |
Invitrogen |
S866 |
Red blood cell lysis buffer |
GIBCO |
A1049201 |
DAPI Prolong Gold |
Life Technologies |
P36931 |
Amphotericin B |
GIBCO |
15290018 |
Penicillin/streptomycin |
GIBCO |
10378016 |
Dextrose |
Fisher Scientific |
D15–500 |
L-glutamine |
Thermo Fisher |
25030081 |
Blasticidin |
Thermo Fisher |
A1113903 |
Puromycin |
Thermo Fisher |
A1113803 |
EDTA |
Thermo Fisher |
15575020 |
Collagenase IV |
Sigma Aldrich |
V900893 |
NEAA |
GIBCO |
11-140-050 |
Betamercaptoethanol |
GIBCO |
M6250 |
D-PBS (no phenol red) |
GIBCO |
14040133 |
Golgiplug |
BD |
555029 |
OCT Tissue-Tek |
Electron Microscopy Sciences |
6255001 |
Acetone |
Sigma Aldrich |
V800023 |
Critical Commercial Assays |
|
|
BD fixation kit |
BD |
554714 |
Foxp3 fixation and permeabilization kit |
Tonbo |
TNB-0607-KIT |
Effectene kit |
QIAGEN |
301425 |
QIAgen RNeasy kit |
QIAGEN |
74104 |
SYBR Green master mix |
Thermo Fisher |
4344463 |
High Capacity RNA to cDNA kit |
Thermo Fisher |
438706 |
Experimental Models: Cell Lines |
|
|
KPC PDA cells and clones |
This paper |
N/A |
Plat-E cells |
CELL BIOLABS |
RV-101 |
Experimental Models: Organisms/Strains |
|
|
C57BL/6J KPC mice |
Fred Hutchinson Cancer Research Center |
Stromnes et al., 2015 |
C57BL/6J mice |
Jackson laboratories |
000664 |
Oligonucleotides (primers) |
|
|
Msln R 5’ TGG ACC TTG TGA ACG AGA TTC 3’ |
This paper |
IDT |
Msln F 5’ TGG ATC AGG GAC TCA GGA TAG 3’ |
This paper |
IDT |
H2-Db R 5’ GGT GAC TTC ACC TTT AGA TCT GGG 3’ |
Lv, D. et. al., 2015 |
IDT |
H2-Db F 5’ AGT GGT GCT GCA GAG CAT TAC AA 3’ |
Lv, D. et. al., 2015 |
IDT |
H2-Kb R 5’ GGT GAC TTT ATC TTC AGG TCT GCT 3’ |
This paper |
IDT |
H2-Kb F 5’ GCT GGT GAA GCA GAG AGA CTC AG 3’ |
This paper |
IDT |
Tap1 R 5’ AGT TCA GGC AGA AGT TGG AAG 3’ |
This paper |
IDT |
Tap1 F 5’ GCC CAG GTA CAG AAT TCC C 3’ |
This paper |
IDT |
Lmp2 R 5’ GGT TAT GTG GAC GCA GCT TA 3’ |
This paper |
IDT |
Lmp2 F 5’ GGT GAC CAG GTA GAT GAC AC 3’ |
This paper |
IDT |
Lmp7 R 5’ GCT GCT TTC CAA CAT GAT GC 3’ |
This paper |
IDT |
Lmp7 F 5’ CCG AGT CCC ATT GTC ATC TAC 3’ |
This paper |
IDT |
ATP5b R 5’ CAA TGC AGG AAA GGA TCA CCA 3’ |
This paper |
IDT |
ATP5b F 5’ CAT CCA AAT GGG CAA AGG TG 3’ |
This paper |
IDT |
Recombinant DNA |
|
|
CBR-GFP retroviral vector |
Stromnes et al., 2015; Smith et al., 2017
|
N/A |
GFP-only retroviral vector |
This report |
N/A |
Ovalbumin-GFP retroviral vector |
This report |
N/A |
Software and Algorithms |
|
|
NetMHC version 4.0 |
http://cbs.dtu.dk/services/NetMHC/ |
N/A |
SYFPEITHI |
http://www.syfpeithi.de/bin/MHCServer.dll/EdiptopePrediction.htm |
N/A |
BIMAS |
https://bimas.cit.nih/gov/ |
N/A |
FlowJo version 10 |
FlowJo |
N/A |
FACS Diva |
BD |
N/A |
GraphPad |
Prism |
N/A |
IVIS100 with Living Image Software |
Xenogen |
N/A |
Imaris9.1.0 |
Bitplane |
N/A |
Vevo 2100 |
Visual Sonics Fujifilm |
N/A |
Real Touch CFX96 PCR detection system |
BioRad |
N/A |
Other |
|
|
DMEM |
GIBCO |
11960051 |
FCS |
GIBCO |
26140079 |
Cell counting beads |
Sigma |
P7458 |
Magnetic beads conjugated to PE |
Miltenyi |
130-048-801 |
Matrigel |
Discovery Labware |
08-774-552 |
4.0 Sutures |
Ethicon |
1611G |
5.0 Sutures |
Ethicon |
8580H |
Magnetic beads conjugated to APC |
Miltenyi |
130-090-855 |
LS Columns |
Miltenyi |
130-042-401 |
QuadroMACS separator |
Miltenyi |
130-090-076 |
CB101–109-H-2Db tetramer |
This report |
N/A |
SIINFEKL-H-2K-b tetramer - APC |
http://tetramer.yerkes.emory.edu/reagents/class-I-mhc |
N/A |