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. 2021 Jan 25;11:592908. doi: 10.3389/fmicb.2020.592908

TABLE 1.

Docking of the SARS-CoV-2 spike protein (PDB id = 6VXX) to selected drugs.

Drug Protein form MolDock score Protein – ligand interactions H-bonds Interacting amino acids
Chloroquine Closed –74.777 –93.770 0.000 —–
Open –72.019 –89.604 –4.967 Gln957, Lys964
Hydroxychloroquine Closed –84.427 –107.534 –4.970 Thr961
Open –89.421 –107.043 –4.329 Gln1010
Ivermectin Closed –140.584 –139.371 –9.530 Thr307, Glu309, Ile3,12, Asn953
Open –140.581 –127.699 –5.495 Lys310, Tyr313, Asn953
Remdesivir Closed –111.007 –122.699 –10.106 Leu303, Glu309, Asn953
Open –110.367 –111.887 –9.071 Thr961, Arg1014
Favipiravir Closed –59.437 –78.637 –12.229 Tyr1007, Gln1011, Arg1014
Open –54.176 –68.112 –6.432 Arg1014

Docking parameters was conducted using Molegro Virtual Docker 6.0.