TABLE 3.
Drug | Viral proteins | MolDock score | Protein – ligand interactions | H-bonds | Interacting amino acids |
Lopinavir | Mpro | –114.628 | –159.244 | –10.981 | Gln110, Thr111, Asn151 |
PLpro | –123.992 | –149.066 | –2.542 | Asn156, Try171 | |
Chloroquine | Mpro | –93.634 | –107.868 | –2.500 | Ser158 |
PLpro | –84.358 | –87.406 | –7.268 | Thr74, Arg82, Asn156 | |
Hydroxychloroquine | Mpro | –95.414 | –112.507 | –5.438 | Gln109, Ser158, Asn203, |
PLpro | –90.097 | –89.041 | –2.500 | Tyr154 | |
Ivermectin | Mpro | –114.860 | –126.234 | –7.944 | Asn151, Asp153, Asn203 |
PLpro | –180.765 | –165.337 | –21.212 | Thr74, Asn128, Gln174, Leu178 | |
Remdesivir | Mpro | –123.033 | –137.126 | –20.588 | Gln110, Thr111, Asn151, Ser158, Thr292 |
PLpro | –141.949 | –137.610 | –20.198 | Thr74, Thr75, Asp76, Ala153, His175 | |
Favipiravir | Mpro | –58.123 | –50.902 | –19.210 | Thr111, Asn151, Arg298 |
PLpro | –58.161 | –72.140 | –13.428 | Phe173, Gln174, Leu178, Val202 |
Mpro, Main protease (PDB id = 6Y2E); PLpro, Papain like protease (PBD id: 6W9C).