Table 1.
Detailed information on the discovered tandem repeats during gap analysis
| Name of TR | Position of tandem repeats on M. avium subsp. paratuberculosis (K-10) genome | Length of TR (bp) | Sequence of TR | |
|---|---|---|---|---|
| Start | Stop | |||
| MAPK_TR_1 | 83 156 | 83 195 | 20 | AATTAACGATATCGAATTTG |
| MAPK_TR_2 | 127 386 | 127 400 | 15 | CCGCCGACCAGCTCT |
| MAPK_TR_3 | 703 849 | 703 948 | 57 | ACGACCATTAAACAAGGAGTGATCGCGAGCGCGGGCGAAGCCCGGGTGAAGCGGGTC |
| MAPK_TR_4 | 1 798 372 | 1 798 524 | 51 | CCCGGCGGCGGCGGTGGCAGCATCCCCGGTGGCCCGACCGGTGGCGGCGGC |
| MAPK_TR_5 | 2 156 149 | 2 156 235 | 21 | CGCCGCGCCCGTCGAGCGTCA |
| MIRU292 | 3 253 654 | 3 253 812 | 53 | GTCATCTGCGCCGCTCCTCCTCATCGCTGCGCTCTGCATCGTCGTCGGCGCGA |
| VNTR25 | 3 665 698 | 3 665 855 | 58 | CTCCTGCGCATCCCGCTGCGCGGAATGCTTCGTCGCCGGGCTCCACCCCAATCACCCA |