Table 4.
Overview of identified genes related to the antimicrobial agents in the test panel, based on four different methods (modified KMA ABRicate, ARIBA, ResFinder Batch Upload)
| Gene | Mapping | Assembly | ||
|---|---|---|---|---|
| Modified KMA | ABRicate | ARIBA | ResFinder Batch Upload | |
| tet(O) | 90a | 91b | 92b | 91 |
| Non-functional tet(O) | 11 | 11 | 11 | 11 |
| tet(O/32/O) | 27 | 3 | 0 | 0 |
| ant(6)-Ia | 6 | 6 | 6 | 6 |
| aph(2″)-If | 2 | 2 | 2 | 2 |
atet(O) was identified in one isolate with a gene length just below the cutoff (89.06%) using modified KMA and therefore considered not present using this method. tet(O) was detected in this isolate by ARIBA and ResFinder Batch Upload
bOne isolate was found to carry tet(O) by ABRicate and ARIBA, but tet(O/32/O) by modified KMA