Table 1.
Predicted and observed gains of 39 microbial rhodopsins expressed in E. coli.
| Origin | Accession | Subfamily | Motif | Base wavelength/nm | [gain] | Observed wavelength/nm | (Observed wavelength)–(base wavelength)/nm |
|---|---|---|---|---|---|---|---|
| Rubricoccus marinus | WP 094550238.1 | BacHR | TSA | 537 | 40.7 | 541 | 4 |
| Rubrivirga marina | WP 095509924.1 | BacHR | TSA | 537 | 39.8 | 548 | 11 |
| Rubrivirga marina | WP 095512583.1 | BacHR | TTD | 537 | 35.5 | 577 | 40 |
| Bacillus sp. CHD6a | WP 082380780.1 | XeR | DTA | 565 | 35.3 | 566 | 1 |
| Bacillus horikoshii | WP 063559373.1 | XeR | DTA | 565 | 35.3 | 565 | 0 |
| Cyanothece sp. PCC 7425 | WP 012628826.1 | BacHR | TSV | 537 | 32.9 | 566 | 29 |
| Cyanobacterium TDX16 | OWY65757.1 | BacHR | TSD | 537 | 32.9 | 546 | 9 |
| Myxosarcina sp. GI1 | WP 052056058.1 | BacHR | TTV | 537 | 31.2 | 557 | 20 |
| Nanohaloarchaea archaeon SW 7 43 1 | PSG98511.1 | XeR | DSA | 565 | 29.2 | 572 | 7 |
| Metagenome sequence | SAMEA2621839 1737175 2 | ClR | NTQ | 530 | 25.7 | 520 | −10 |
| Metagenome sequence | SAMEA2620666 5055 4 | ClR | NTQ | 530 | 25.1 | 525 | −5 |
| Nonlabens sp. YIK11 | AIG86802.2 | PR | DTE | 520 | 21.5 | 531 | 11 |
| Metagenome sequence | SAMEA2622673 750013 58 | ClR | NTQ | 530 | 21.4 | 534 | 4 |
| Metagenome sequence | EBN24473.1 | PR | DTE | 520 | 20.0 | 525 | 5 |
| Metagenome sequence | SAMEA2620404 88891 6 | PR | DTE | 520 | 20.0 | 527 | 7 |
| Parvularcula oceani | WP_051881578.1 | NaR | NDQ | 525 | 19.7 | 534 | 9 |
| Rubrobacter aplysinae | WP 084709429.1 | DTG | DTG | 535 | 19.5 | 541 | 6 |
| Metagenome sequence | SAMEA2619531 1917517 3 | PR | DTE | 520 | 18.0 | 537 | 17 |
| Metagenome sequence | SAMEA2622766 213679 12 | XeR | DSA | 565 | 17.8 | 572 | 7 |
| Reinekea forsetii | WP 100255947.1 | PR | DTE | 520 | 17.1 | 524 | 4 |
| Bacteroidetes bacterium | PSR14004.1 | PR | DTE | 520 | 15.4 | 537 | 17 |
| Metagenome sequence | SAMEA2620980 19116 14 | PR | DTE | 520 | 15.4 | 536 | 16 |
| Hassallia byssoidea VB512170 | KIF37192.1 | BacHR | TSD | 537 | 15.1 | 535 | −2 |
| Erythrobacter gangjinensis | WP 047006274.1 | NaR | NDQ | 525 | 13.7 | 531 | 6 |
| Pontimonas salivibrio | WP 104913209.1 | PR | DTE | 520 | 12.2 | 538 | 18 |
| Cyanobacteria bacterium QH 1 48 107 | PSO50292.1 | CyanDTE | DTD | 545 | 12.0 | 548 | 3 |
| Sphingopyxis baekryungensis | WP 022671827.1 | ClR | NTQ | 530 | 11.0 | 518 | −12 |
| Sphingobacteriales bacterium BACL12 MAG120802bin5 | KRP08428.1 | PR | DTE | 520 | 10.9 | 531 | 11 |
| Metagenome sequence | SAMEA2621401 1198262 5 | PR | DTE | 520 | 10.9 | 534 | 14 |
| Spirosoma oryzae | WP 106137740.1 | NaR | NDQ | 525 | 10.8 | 533 | 8 |
| Aliterella atlantica | WP 045053084.1 | BacHR | TSD | 537 | 10.8 | 533 | −4 |
| Rosenbergiella nectarea | WP 092678153.1 | DTG | DTG | 535 | 10.8 | 533 | −2 |
| Metagenome sequence | SAMEA2620980 1827033 1 | PR | DTE | 520 | 10.4 | 537 | 17 |
| Fluviicola sp. XM24bin1 | PWL28924.1 | PR | DTE | 520 | 10.4 | 538 | 18 |
| Metagenome sequence | SAMEA2622173 654706 7 | PR | DTE | 520 | 10.4 | 530 | 10 |
| Metagenome sequence | SAMEA2619399 1397592 7 | PR | DTE | 520 | 10.4 | 529 | 9 |
| Sphingomonas sp. Leaf34 | WP 055875688.1 | DTG | DTG | 535 | 10.3 | 540 | 5 |
| Sphingomonas sp. Leaf38 | WP 056475157.1 | DTG | DTG | 535 | 10.3 | 540 | 5 |
| Metagenome sequence | ECV93033.1 | PR | DTE | 520 | 10.3 | 542 | 22 |