Table 2.

Estimates of false negative rates (FNR) and false discovery rates (FDR) for different structural variant calling methods. Bold numbers highlight the lowest values in each column.

Method	Deletions		Duplications		Inversions		Translocations		All
	FNR	FDR	FNR	FDR	FNR	FDR	FNR	FDR	FNR	FDR
Illumina + Manta	0.14	0.13	0.17	0.5	0	0.29	0	0.79	0.12	0.32
ONT + Minimap2 + Sniffles	0.06	0.06	0	0.14	0.1	0.55	0.25	0.91	0.07	0.42
ONT + ngmlr + Sniffles	0.22	0.03	0	0.4	0.2	0.5	0.25	0.4	0.20	0.21