Table 1.
SNP sites detected in two or more traits
| SNP | Trait | Environment | Chromosome | Position | -log10p | R2(%) |
|---|---|---|---|---|---|---|
| RAC875_rep_c111906_144 | FLL/FLA | E2 | 2A | 27,967,266 | 4.45–4.95 | 2.84–3.23 |
| Tdurum_contig19022_1524 | FLL/FLA | E2 | 7B | 530,376,060 | 4.13–4.24 | 2.61–2.68 |
| wsnp_CAP11_c2435_1256981 | FLL/FLA/FLW | E2E5 | 7A | 655,447,518 | 5.76–7.74 | 3.79–5.32 |
| GENE-0035_150 | FLL/FLA/FLW/MTN | E2E5 | 1B | 465,098,532 | 4.22–6.73 | 2.65–4.55 |
| GENE-0993_47 | FLL/FLA/FLW/MTN | E2E5 | 2B | 55,691,934 | 4.68–7.52 | 2.99–5.16 |
| Tdurum_contig73039_241 | FLL/FLA/FLW/MTN | E2E5 | 3B | 527,296,306 | 5.03–7.47 | 3.25–5.12 |
| Tdurum_contig4974_355 | FLL/FLA/FLW/MTN | E2E5 | 4B | 95,708,069 | 4.71–7.29 | 3.01–4.98 |
| Ku_c7989_781 | FLL/FLA/FLW/MTN | E2E5 | 5B | 253,378,428 | 4.28–5.77 | 2.7–3.82 |
| D_contig73483_655 | FLL/FLA/FLW/MTN | E2E5 | 5D | 100,546,173 | 4.7–7.93 | 3.01–5.47 |
| GENE-3803_329 | FLL/FLA/FLW/MTN | E2E5 | 6B | 556,487,785 | 4.14–5.61 | 2.59–4.37 |
| BobWhite_c36864_159 | FLL/FLA/FLW/MTN | E2E5 | 7B | 131,745,465 | 4.19–6.86 | 2.63–4.85 |
| Tdurum_contig41918_2469 | FLL/FLA/FLW/MTN | E2E5 | 7B | 628,465,395 | 4.74–7.57 | 3.03–5.20 |
| Tdurum_contig42029_1151 | FLL/FLA/FLW/MTN | E2E5 | 7B | 660,237,019 | 4.78–7.64 | 3.07–5.25 |
| BS00099128_51 | FLW/MTN | E2E5 | 2D | 470,217,019 | 4.27–4.73 | 2.91–3.23 |
| Tdurum_contig17320_458 | FLW/MTN | E2E5 | 3A | 170,784,653 | 4.12–6.46 | 2.80–4.61 |
| Excalibur_c43604_751 | FLW/MTN | E2E5 | 3B | 807,286,509 | 4.16–6.97 | 2.83–5.02 |
| Tdurum_contig100205_499 | FLW/MTN | E2E5 | 4B | 78,818,313 | 4.38–6.7 | 3–4.8 |
| wsnp_Ex_c402_791233 | FLA/FLW | E2E5 | 1B | 548,623,447 | 5.51–6.37 | 3.87–4.34 |
| Excalibur_c89155_115 | FLA/FLW | E5 | 6B | 619,483,986 | 4.1–4.36 | 2.78–2.8 |
| GENE-1343_878 | FLA/FLW/MTN | E2E5 | 2D | 13,440,948 | 5.10–6.4 | 3.47–4.3 |
| D_F1BEJMU01DOWJ3_176 | FLA/FLW/MTN | E2E5 | 2D | 138,694,869 | 5.49–6.38 | 3.66–4.46 |
| GENE-0826_51 | FLA/FLW/MTN | E2E5 | 3A | 32,151,249 | 4.94–6.07 | 3.23–4.09 |
| Tdurum_contig16643_466 | FLA/FLW/MTN | E2E5 | 3A | 549,267,983 | 4.49–5.85 | 2.89–4.12 |
| D_GBF1XID01CVZMX_132 | FLA/FLW/MTN | E2E5 | 5D | 483,515,041 | 4.89–6.97 | 3.2–5.02 |
| IACX1201 | FLA/FLW/MTN | E2E5 | 6B | 219,580,396 | 4.06–5.96 | 2.65–4.2 |
| D_contig38762_578 | FLA/FLW/MTN | E2E5 | 6D | 67,378,176 | 5.39–6.66 | 3.75–4.49 |
| RAC875_c48208_304 | FLA/FLW/MTN | E2E5 | 7B | 3,505,857 | 5.28–6.17 | 3.49–4.13 |
| GENE-4534_455 | FLA/FLW/MTN | E2E5 | 7B | 152,051,848 | 5.33–6.43 | 3.52–4.32 |
| Tdurum_contig42179_1562 | PET/MTN | E2E5 | 3A | 266,433,409 | 4.71–7.27 | 3.19–5.26 |
| D_contig26931_415 | PET/MTN | E2E5 | 5D | 283,010,539 | 4.12–7.34 | 2.74–5.32 |
| wsnp_Ex_c14654_22713386 | PET/MTN | E2E5 | 7A | 11,098,761 | 4.53–7.07 | 3.05–5.1 |
| BS00044895_51 | PET/MTN | E2E5 | 7A | 211,733,339 | 4.35–7.05 | 2.91–5.08 |
| Tdurum_contig19022_1524 | PET/MTN | E2E5 | 7B | 530,376,060 | 4.6–5.51 | 3.13–3.85 |
| Kukri_c56333_138 | MTN/FC | BLUP | 1B | 670,176,213 | 4.50–4.75 | 1.80–2.77 |
| BobWhite_c19617_154 | GFR/TGW | BLUP | 2B | 209,099,527 | 4.89–4.91 | 3.46–3.59 |
| Kukri_c322_1394 | FD/SD | E1/BLUP | 4B | 520,238,759 | 4.64–4.8 | 3.07–4.07 |
| Tdurum_contig48366_1324 | FD/SD | E1E2/BLUP | 4B | 637,387,355 | 4.13–4.88 | 2.62–5.02 |
| Tdurum_contig50783_67 | FD/SD | BLUP | 4B | 637,387,809 | 4.07–4.24 | 2.57–3.11 |
| RAC875_rep_c105718_585 | FIL/SIL/PH | E3E4E5E6/BLUP | 4D | 25,989,112 | 4.09–7.89 | 2.03–7.56 |
| BS00044895_51 | FIL/SIL/TH | E1E2 | 7A | 211,733,339 | 4.4–6.47 | 3.78–5.97 |
| BS00022854_51 | SIL/TH | E1E5 | 5B | 614,983,507 | 4.29–6.13 | 2.7–5.62 |
| Ex_c52589_795 | GPC/WGC | E1 | 3D | 531,375,739 | 4.36–4.58 | 2.48–2.53 |