TABLE 2.
Positions of the quantitative trait nucleotides (QTNs) associated with seed mineral content in common been.
| Trait | QTN | Chr. | Position (bp) | Method of detection | −log10(p)a | R2 | MAFb | SNPc | Additivityd |
| N | N_1.1 | Pv01 | 436,239 | TASSEL | 3.66 | 0.05 | 0.11 | G/T | 0.15 |
| N_1.2 | Pv01 | 436,255 | TASSEL/MLMM | 3.16 | 0.06 | 0.12 | A/G | 0.15 | |
| N_1.3 | Pv01 | 459,311 | TASSEL | 3.29 | 0.06 | 0.12 | C/T | 0.15 | |
| N_1.4 | Pv01 | 49,116,667 | TASSEL | 3.83 | 0.06 | 0.24 | A/T | 0.06 | |
| N_2 | Pv02 | 45,348,786 | TASSEL | 3.69 | 0.07 | 0.17 | G/A | −0.31 | |
| N_3.1 | Pv03 | 38,974,600 | TASSEL | 4.95 | 0.07 | 0.07 | A/T | 0.23 | |
| N_3.2 | Pv03 | 39,046,040 | TASSEL | 3.34 | 0.05 | 0.22 | T/C | −0.20 | |
| N_3.3 | Pv03 | 39,187,621 | TASSEL | 3.17 | 0.04 | 0.21 | A/G | −0.20 | |
| N_3.4 | Pv03 | 39,194,457 | TASSEL | 3.17 | 0.04 | 0.21 | G/T | −0.20 | |
| N_3.5 | Pv03 | 39,225,372 | TASSEL | 3.74 | 0.06 | 0.08 | A/T | 0.23 | |
| N_3.6 | Pv03 | 39,225,437 | TASSEL | 3.17 | 0.04 | 0.21 | G/A | −0.20 | |
| N_3.7 | Pv03 | 39,235,479 | TASSEL | 3.17 | 0.04 | 0.21 | C/T | −0.20 | |
| N_3.8 | Pv03 | 39,249,094 | TASSEL | 3.17 | 0.04 | 0.21 | T/G | −0.20 | |
| N_3.9 | Pv03 | 39,252,941 | TASSEL | 4.61 | 0.06 | 0.07 | A/G | 0.21 | |
| N_5.1 | Pv05 | 877,194 | MLMM | 4.64 | −e | 0.40 | C/T | 0.06 | |
| N_5.2 | Pv05 | 36,788,205 | TASSEL | 3.37 | 0.05 | 0.28 | C/T | 0.06 | |
| N_7 | Pv07 | 1,605,873 | TASSEL | 3.86 | 0.06 | 0.07 | G/A | 0.25 | |
| N_8.1 | Pv08 | 11,652,741 | TASSEL | 3.43 | 0.06 | 0.26 | T/C | −0.23 | |
| N_8.2 | Pv08 | 11,773,516 | TASSEL | 3.44 | 0.05 | 0.09 | A/T | −0.02 | |
| N_8.3 | Pv08 | 11,864,133 | TASSEL | 3.62 | 0.05 | 0.25 | T/A | −0.22 | |
| N_8.4 | Pv08 | 11,977,715 | TASSEL | 3.44 | 0.05 | 0.09 | C/T | −0.02 | |
| N_10.1 | Pv10 | 7,465,267 | TASSEL/MLMM | 4.81 | 0.07 | 0.15 | A/T | −0.24 | |
| N_10.2 | Pv10 | 10,200,728 | TASSEL | 4.28 | 0.06 | 0.15 | A/T | −0.28 | |
| P | P_7.1 | Pv07 | 3,864,210 | TASSEL/MLMM | 4.30 | 0.09f | 0.19 | G/C | 0.05 |
| P_7.2 | Pv07 | 3,888,203 | TASSEL | 4.30 | 0.09 | 0.19 | C/A | 0.05 | |
| P_7.3 | Pv07 | 3,894,237 | TASSEL | 4.30 | 0.09 | 0.19 | T/C | 0.05 | |
| P_7.4 | Pv07 | 4,076,469 | TASSEL | 4.30 | 0.09 | 0.19 | G/A | 0.05 | |
| P_8 | Pv08 | 58,013,431 | TASSEL | 4.12 | 0.08 | 0.22 | C/G | −0.02 | |
| Ca | Ca_9 | Pv09 | 9,978,327 | TASSEL | 4.50 | 0.09 | 0.05 | C/G | −0.13 |
| Mg | Mg_8 | Pv08 | 50,916,423 | TASSEL | 5.02 | 0.13 | 0.15 | G/T | 0.02 |
| Zn | Zn_6.1 | Pv06 | 21,113,843 | TASSEL | 4.93 | 0.10 | 0.45 | A/G | 2.43 |
| Zn_6.2 | Pv06 | 22,539,825 | TASSEL | 4.16 | 0.08 | 0.41 | A/T | −2.17 |
aAll p-values are reported from F-test from TASSEL, except for N_5.1 (t-test from MLMM). bMinor allele frequency. cAllelic substitution at SNP locus. dThe effect of allelic substitution at SNP locus (difference between two homozygote classes). eR2 value for optimal MLMM model including N_1.2, N_5.1 and N_10.1 is equal to 0.25. fR2 value for P_7.1 in MLMM is equal to 0.11.