Table 1.
SARS-CoV-2 and related viruses with variants lacking ORF8 identified in wild or domestic species.
| Sequence | GISAID Accession ID | Collection date | Location | Clade (Nextclade) | Lineage (Pangolin) | ORF8 nonsense mutation | Spike amino acid substitutions | |
|---|---|---|---|---|---|---|---|---|
| Pangolin (Manis javanica) | Guangxi/P1E | EPI_ISL_410539 | 2017 | China/Guangxi | 19B | B.15 | Q23stop | 92 including V483Q, F490Y, N501T, P681M |
| Mink (Neovison vison) | mDK-28 | EPI_ISL_641421 | 16/10/2020 | Denmark | 20A | B.1 | E19stop | T95I, D614G |
| mDK-29 | EPI_ISL_641422 | 16/10/2020 | D614G | |||||
| mDK-30 | EPI_ISL_641423 | 16/10/2020 | D614G | |||||
| mDK-154 | EPI_ISL_683005 | 05/11/2020 | D614G | |||||
| mDK-158 | EPI_ISL_683009 | 05/11/2020 | D614G | |||||
| mDK-159 | EPI_ISL_683010 | 05/11/2020 | D614G | |||||
| mDK-172 | EPI_ISL_683023 | 04/11/2020 | N501T, D614G | |||||
| mDK-173 | EPI_ISL_683024 | 04/11/2020 | N501T, D614G | |||||
| mDK-174 | EPI_ISL_683025 | 04/11/2020 | N501T, D614G |