Table 2:

Minority variants and rates (>2%) found across 16 WRCEVA isolates

Sample	Nt	Nuc	Read Depth	A	U	G	C	Variant Rate	Location	Result
WRCEVA_000501	12049	C	2116	0	95	1	2020	4.5%	ORF1ab	N3928K
WRCEVA_000502	10207	C	2240	0	118	0	2122	5.3%	-	-
WRCEVA_000502	16050	U	3853	0	3322	0	531	13.8%	-	-
WRCEVA_000502	17489	A	4597	4433	162	1	1	3.6%	ORF1ab	E5742V
WRCEVA_000502	21526	A	8749	6508	0	2240	1	25.6%	ORF1ab	I7088V
WRCEVA_000503	14220	C	1638	1	463	0	1174	28.3%	-	-
WRCEVA_000504	1556	A	2828	2499	0	328	1	11.6%	ORF1ab	I431V
WRCEVA_000504	27925	C	2857	0	134	0	2723	4.7%	ORF8	T11I
WRCEVA_000507	19515	A	2393	2295	1	97	0	4.1%	-	-
WRCEVA_000508	9756	G	1376	28	0	1348	0	2.1%	ORF1ab	R3164H
WRCEVA_000508	26056	G	2092	0	86	2006	0	4.1%	ORF3a	D222Y
WRCEVA_000508	27556	G	2066	128	0	1938	0	6.2%	ORF7a	A55T
WRCEVA_000509	11956	C	1962	0	199	0	1763	10.1%	-	-
WRCEVA_000509	17245	C	4062	2	470	0	3590	11.6%	ORF1ab	R5661C
WRCEVA_000509	18005	U	5408	1	4949	458	0	8.5%	ORF1ab	L5915R
WRCEVA_000509	25569	U	3448	4	3326	113	5	3.5%	-	-
WRCEVA_000509	27919	U	839	0	809	0	30	3.6%	ORF8	I9T
WRCEVA_000509	28767	C	2011	0	109	0	1902	5.4%	N	T165I
WRCEVA_000511	3003	U	2880	79	2787	1	13	2.7%	ORF1ab	V913E
WRCEVA_000511	10738	U	4580	0	4440	0	140	3.1%	-	-
WRCEVA_000511	25892	U	133	0	130	0	3	2.3%	ORF3a	I167T
WRCEVA_000511	28001	G	1414	1	29	1384	0	2.1%	-	-
WRCEVA_000513	27046	C	5539	0	138	0	5401	2.5%	M	T175M
WRCEVA_000514	11603	A	5405	5075	0	330	0	6.1%	ORF1ab	M3780V
WRCEVA_000514	26526	G	525	0	20	505	0	3.8%	M	A2S