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. 2021 Mar 23;16(3):e0231916. doi: 10.1371/journal.pone.0231916

Table 1. Biomedical translator consortium deployed beacons.

Subdomaina Beacon Description Wrapped Knowledge Source
semmeddb Semantic Medline Database [8] https://skr3.nlm.nih.gov/SemMedDB/
biolink Monarch Database Biolink API [10] https://api.monarchinitiative.org/api/
hmdb Human Metabolome Database [11] http://www.hmdb.ca/
rhea Rhea Annotated Biochemical Reactions database [12] https://www.rhea-db.org/
smpdb Small Molecular Pathway Database [13] http://smpdb.ca/
ndex NDex Bio Graph Archive [14] http://www.ndexbio.org

a The basepath of each Beacon has the form https://kba.ncats.io/beacon/<Subdomain>, where the <Subdomain> is as listed in column 1 of the table.