Key resources table.
| Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Biological sample (Bos taurus) | Feces | This paper | N = 9, sex unknown | |
| Biological sample (Bison bison) | Feces | This paper | N = 20, sex unknown | |
| Biological sample (Ovis aries) | Feces | This paper | N = 13, twelve females | |
| Biological sample (Ovis canadensis) | Feces | This paper | N = 10, sex unknown | |
| Biological sample (Sus scrofa domesticus) | Feces | This paper | N = 9, sex unknown | |
| Biological sample (Sus scrofa) | Feces | This paper | N = 16, five females | |
| Biological sample (Vicugna pacos) | Feces | This paper | N = 8, sex unknown | |
| Biological sample (Vicugna vicugna) | Feces | This paper | N = 5, two females | |
| Biological sample (Canis lupus familiaris) | Feces | This paper | Comparative: N = 7, four females Experiment: N = 9, sex unknown | |
| Biological sample (Canis lupus) | Feces | This paper | Comparative: N = 9, sex unknown Experiment: N = 10, sex unknown | |
| Biological sample (Oryctolagus cuniculus) | Feces | This paper | Domesticated: N = 11, four femalesWild: N = 12, sex unknown | |
| Biological sample (Cavia porcellus) | Feces | This paper | N = 10, zero female | |
| Biological sample (Cavia tschudii) | Feces | This paper | N = 11, sex unknown | |
| Biological sample(Mus musculus) | Feces | This paper | Comparative: N = 9 (domesticated), zero female N = 9 (wild), sex unknown Experiments: N = 49 (domesticated), zero female N = 6 (wild), sex unknown |
|
| Biological sample (Rattus norvegicus) | Feces | This paper | Domesticated: N = 6, sex unknown | |
| Biological sample (Rattus norvegicus) | Intestinal sample | This paper | Wild: N = 10, three females | |
| Biological sample (Pan troglodytes) | Feces | This paper | Wild: N = 7, seven females Captive: N = 3, two females |
|
| Biological sample (Homo sapiens) | Feces | This paper | N = 7, five females | |
| Sequence-based reagent | 515F | Caporaso et al., 2011 | PCR primers | GTGCCAGCMGCCGCGGTAA |
| Sequenced-based reagent | 806R | Caporaso et al., 2012 | PCR primers | GGACTACNVGGGTWTCTAAT |
| Software, algorithm | R | R Core Team | Version 3.3 | |
| Software, algorithm | QIIME | Caporaso et al., 2010 | Version 1.8 | |
| Software, algorithm | vegan | Oksanen et al., 2017 | ||
| Software, algorithm | lme4 | Bates et al., 2015 | ||
| Software, algorithm | TimeTree | Kumar et al., 2017 | http://timetree.org | |
| Software, algorithm | boot | Canty and Ripley, 2020 | Version 1.3-25 |