Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2021 Feb 15;17(4):363–368. doi: 10.1038/s41589-020-00724-z

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

PMC Copyright notice

Fig. 1 — The PoDP links genomic and metabolomic data deposited in public repositories, accompanied by minimal metadata. The platform documents basic submitter information as well as accession numbers of the metabolome and genome data. Standardized logging of key experimental details enables users to better search and compare datasets, and user-defined labels of genome and experimental details (sections 3 and 4) enable straightforward submission of multiple links. The core of the platform consists of links between the genomic and metabolomic datasets and links between BGCs and MS/MS spectra, which facilitate data integration. PMID, PubMed ID; OD, optical density; CE, collision energy; SMILES, simplified molecular-input line-entry; IUPAC, International Union of Pure and Applied Chemistry; MS², MS/MS fragmentation.