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. 2021 Mar 10;8:636940. doi: 10.3389/fmolb.2021.636940

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Copyright © 2021 Fuchigami, Niina and Takada.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Flexible-fitting MD simulations. (A) Representative time series of the correlation coefficient (c.c.) of pseudo-AFM image of the simulated structure with the “experimental” AFM image. Shown here are results from three different $σ$ values, 0.1, 0.3, and 0.5 nm in blue, red, and green, respectively. (B) The synthetic-AFM image used as an “experimental” AFM image in the flexible-fitting. Scale bar: 5 nm. (C) The nucleosome initial structure. (D) The simulated structure with the highest c.c..