Table 2.
Sequencing data and quality parameters.
| Sample | Raw reads | Clean reads | Multiple mapped (%) | Uniquely mapped (%) | Q30 (%) | GC (%) |
|---|---|---|---|---|---|---|
| JC1 | 107.54 M | 104.92 M | 6299668 (6.00) | 93010583 (88.65) | 96.13 | 47.73 |
| JC2 | 109.24 M | 105.23 M | 13308196 (12.65) | 84687626 (80.48) | 95.89 | 53.21 |
| JC3 | 111.36 M | 107.18 M | 8417074 (7.85) | 93783447 (87.50) | 95.86 | 48.32 |
| JR1 | 110.64 M | 107.46 M | 7548912 (7.02) | 94792432 (88.21) | 95.81 | 48.05 |
| JR1 | 102.58 M | 100.09 M | 6540337 (6.53) | 88766317 (88.69) | 96.21 | 47.62 |
| JR1 | 117.57 M | 114.35 M | 9002737 (7.87) | 99731881 (87.22) | 96.01 | 47.96 |
| JS1 | 115.24 M | 110.56 M | 8323574 (7.53) | 97330051 (88.03) | 95.55 | 47.73 |
| JS2 | 110.87 M | 106.66 M | 7483362 (7.02) | 93909225 (88.04) | 95.77 | 47.61 |
| JS3 | 115.40 M | 110.99 M | 9413810 (8.48) | 96283860 (86.75) | 95.77 | 48.21 |
M, the size of the data volume; Q30, the percentage of bases with a Qphred value greater than 30 in Raw base to the total base; GC, the percentage of the total number of G and C in CleanBase to the total number of bases.