Table 1.
Associated gene or loci | Protein | OMIM | Genomic coordinates (GRCh38) | Most significantly associated SNP | Reference |
---|---|---|---|---|---|
Gene harbouring presumed causative variant(s) | |||||
TCF4 | Transcription factor 4 | 613267 | 18:55,222,184–55,635,956 | rs613872 rs784257 |
Baratz et al. (2010); Wieben et al. (2012) Afshari et al. (2017) |
COL8A2 | Collagen Type VIII Alpha 2 Chain | 136800 | 1:36,095,238–36,126,206 | NA | Biswas et al. (2001) |
SLC4A11 | Solute carrier family 4 (sodium borate cotransporter), member 11 | 613268 | 20:3,227,416–3,241,483 | NA | Vithana et al. (2008) |
ZEB1 | Zinc finger E box-binding homeobox 1 | 613270 | 10:31,318,416–31,529,813 | NA | Mehta et al. (2008) |
AGBL1 | ATP/GTP-binding protein-like 1 | 615523 | 15:86,079,619–87,031,475 | NA | Riazuddin et al. (2013) |
LOXHD1 | Lipoxygenase homology domain-containing 1 | NA | 18:46,476,960–46,657,114 | NA | Riazuddin et al. (2012) |
Associated loci identified via GWAS | |||||
KANK4 | KN motif- and ankyrin repeat domain-containing protein 4 | NA | 1:62,236,164–62,319,433 | rs79742895 | Afshari et al. (2017) |
LAMC1 | Laminin, gamma-1 | NA | 1:183,023,419–183,145,591 | rs3768617 | Afshari et al. (2017) |
LINC00970/ATP1B1 | ATPase, Na+/K+ transporting, beta-1 polypeptide | NA | 1:169,106,689–169,132,718 | rs1200114 | Afshari et al. (2017) |
OMIM, online inheritance in man; GWAS, genome wide association study; SNP, single nucleotide polymorphism.