Table 4.
Consistently differential DNA methylated sites (P < 0.05 and the same direction of logFC in both datasets) between ovarian cancer tissues and normal tissues based on GEO DNA methylation datasets.
| ID | chrom | chromStart | chromEnd | GSE155760 | GSE146552 | Gene | ||
|---|---|---|---|---|---|---|---|---|
| logFC | P-value | logFC | P-value | |||||
| cg01875106 | chr11 | 132287341 | 132287343 | −0.6360 | 1.050 × 10−12 | −0.2740 | 1.500 × 10−4 | OPCML |
| cg11500790 | chr11 | 132321480 | 132321482 | −0.5980 | 1.400 × 10−7 | −0.3440 | 8.150 × 10−5 | OPCML |
| cg05806819 | chr11 | 132432636 | 132432638 | −0.0195 | 3.980 × 10−2 | −0.0523 | 3.340 × 10−2 | OPCML |
| cg03784083 | chr11 | 132513894 | 132513896 | −0.4300 | 4.610 × 10−4 | −0.2160 | 4.350 × 10−3 | OPCML |
| cg08080489 | chr11 | 132526946 | 132526948 | −0.5720 | 6.510 × 10−8 | −0.2800 | 1.240 × 10−4 | OPCML |
| cg17242596 | chr11 | 132527295 | 132527297 | −0.6000 | 3.930 × 10−8 | −0.3990 | 1.650 × 10−5 | OPCML |
| cg06967998 | chr11 | 132527437 | 132527439 | −0.6200 | 1.490 × 10−7 | −0.3880 | 2.850 × 10−5 | OPCML |
| cg10376306 | chr11 | 132588617 | 132588619 | −0.3060 | 7.050 × 10−4 | −0.1590 | 5.340 × 10−3 | OPCML |
| cg12156287 | chr11 | 132662865 | 132662867 | −0.4030 | 3.800 × 10−12 | −0.1600 | 2.330 × 10−2 | OPCML |
| cg18944144 | chr11 | 132673498 | 132673500 | −0.5470 | 1.730 × 10−6 | −0.2650 | 1.120 × 10−3 | OPCML |
| cg05035315 | chr11 | 132691483 | 132691485 | −0.6190 | 2.010 × 10−9 | −0.3730 | 7.990 × 10−6 | OPCML |
| cg13136241 | chr11 | 132709827 | 132709829 | −0.3190 | 1.080 × 10−3 | −0.1770 | 1.210 × 10−2 | OPCML |
| cg26824847 | chr11 | 132728087 | 132728089 | −0.5170 | 2.470 × 10−10 | −0.3810 | 1.270 × 10−6 | OPCML |
| cg19743254 | chr11 | 132735813 | 132735815 | −0.3410 | 1.090 × 10−3 | −0.1950 | 1.950 × 10−2 | OPCML |
| cg10966440 | chr11 | 132745700 | 132745702 | −0.6570 | 7.910 × 10−11 | −0.4670 | 8.810 × 10−7 | OPCML |
| cg23813681 | chr11 | 132772322 | 132772324 | −0.4060 | 1.880 × 10−4 | −0.1810 | 2.100 × 10−2 | OPCML |
| cg16813466 | chr11 | 132811377 | 132811379 | −0.4090 | 6.750 × 10−5 | −0.2440 | 1.190 × 10−3 | OPCML |
| cg07649562 | chr11 | 132813503 | 132813505 | 0.0662 | 4.840 × 10−2 | 0.0419 | 2.210 × 10−2 | OPCML |
| cg18710784 | chr11 | 132813562 | 132813564 | 0.2530 | 9.680 × 10−3 | 0.2100 | 1.020 × 10−3 | OPCML |
| cg15618210 | chr11 | 132816802 | 132816804 | −0.6010 | 9.760 × 10−8 | −0.3020 | 5.000 × 10−4 | OPCML |
| cg02993944 | chr11 | 132831380 | 132831382 | −0.3230 | 1.030 × 10−3 | −0.1520 | 1.250 × 10−2 | OPCML |
| cg16123848 | chr11 | 132853100 | 132853102 | −0.4960 | 9.470 × 10−6 | −0.3320 | 3.560 × 10−4 | OPCML |
| cg11747462 | chr11 | 132869599 | 132869601 | −0.2650 | 6.650 × 10−4 | −0.1320 | 2.100 × 10−2 | OPCML |
| cg03887438 | chr11 | 132910641 | 132910643 | −0.3410 | 3.090 × 10−13 | −0.1540 | 5.610 × 10−3 | OPCML |
| cg18413062 | chr11 | 132931731 | 132931733 | −0.4250 | 1.660 × 10−9 | −0.2350 | 5.720 × 10−4 | OPCML |
| cg13296579 | chr11 | 132934961 | 132934963 | −0.1630 | 3.160 × 10−2 | −0.0885 | 3.160 × 10−2 | OPCML, AP004782.1 |
| cg20417723 | chr11 | 132935119 | 132935121 | −0.2570 | 4.250 × 10−3 | −0.1440 | 1.560 × 10−2 | OPCML, AP004782.1 |
| cg26906285 | chr11 | 132935462 | 132935464 | −0.1720 | 1.820 × 10−2 | −0.1560 | 3.880 × 10−3 | OPCML, AP004782.1 |
| cg05886537 | chr11 | 132936427 | 132936429 | −0.3250 | 2.030 × 10−3 | −0.1770 | 3.810 × 10−3 | OPCML, AP004782.1 |
| cg08945802 | chr11 | 132946454 | 132946456 | −0.1980 | 1.710 × 10−2 | −0.0864 | 4.530 × 10−2 | OPCML |
| cg05807849 | chr11 | 132946691 | 132946693 | −0.4100 | 2.210 × 10−5 | −0.2090 | 7.820 × 10−3 | OPCML |
| cg11983942 | chr11 | 132946933 | 132946935 | −0.3910 | 8.510 × 10−8 | −0.1930 | 8.810 × 10−4 | OPCML |
| cg08357627 | chr11 | 132949125 | 132949127 | −0.5150 | 3.900 × 10−11 | −0.2480 | 3.460 × 10−4 | OPCML |
| cg11515095 | chr11 | 132949436 | 132949438 | −0.3320 | 1.500 × 10−3 | −0.1840 | 8.340 × 10−3 | OPCML |
| cg10335834 | chr11 | 132949780 | 132949782 | −0.2800 | 1.370 × 10−3 | −0.1570 | 1.030 × 10−2 | OPCML |
| cg15702349 | chr11 | 132950103 | 132950105 | −0.1970 | 4.550 × 10−3 | −0.0989 | 1.620 × 10−2 | OPCML |
| cg26237595 | chr11 | 132955641 | 132955643 | −0.2940 | 6.960 × 10−3 | −0.1910 | 6.130 × 10−3 | OPCML |
| cg01311955 | chr11 | 132965249 | 132965251 | −0.2780 | 1.140 × 10−4 | −0.2670 | 1.270 × 10−3 | OPCML |
| cg20972294 | chr11 | 133005918 | 133005920 | −0.3710 | 9.260 × 10−4 | −0.1940 | 1.420 × 10−2 | OPCML |
| cg12697833 | chr11 | 133085432 | 133085434 | −0.5370 | 9.690 × 10−8 | −0.2850 | 1.670 × 10−3 | OPCML |
| cg26311804 | chr11 | 133155302 | 133155304 | −0.3740 | 4.070 × 10−4 | −0.1680 | 6.610 × 10−3 | OPCML |
| cg04913291 | chr11 | 133187955 | 133187957 | −0.4150 | 9.420 × 10−6 | −0.2830 | 1.090 × 10−3 | OPCML |
| cg22209355 | chr11 | 133208306 | 133208308 | −0.3650 | 6.770 × 10−4 | −0.2050 | 6.410 × 10−4 | OPCML |
| cg05131064 | chr11 | 133228365 | 133228367 | −0.2820 | 2.300 × 10−3 | −0.1370 | 2.400 × 10−2 | OPCML |
| cg08872013 | chr11 | 133229156 | 133229158 | −0.2390 | 3.790 × 10−3 | −0.1100 | 2.460 × 10−2 | OPCML |
| cg20886183 | chr11 | 133230390 | 133230392 | −0.2530 | 4.390 × 10−3 | −0.1980 | 1.230 × 10−2 | OPCML, OPCML-IT1 |
| cg01880176 | chr11 | 133230949 | 133230951 | −0.3070 | 7.980 × 10−5 | −0.1540 | 4.180 × 10−3 | OPCML, OPCML-IT1 |
| cg06379368 | chr11 | 133231146 | 133231148 | −0.2650 | 1.750 × 10−3 | −0.1630 | 1.330 × 10−2 | OPCML, OPCML-IT1 |
| cg13974487 | chr11 | 133231880 | 133231882 | −0.2720 | 1.790 × 10−3 | −0.1710 | 1.340 × 10−3 | OPCML, OPCML-IT1 |
| cg18204273 | chr11 | 133232926 | 133232928 | −0.1850 | 2.260 × 10−2 | −0.1540 | 1.490 × 10−2 | OPCML, OPCML-IT1 |
| cg01140660 | chr11 | 133233199 | 133233201 | −0.4660 | 1.190 × 10−4 | −0.2160 | 5.430 × 10−3 | OPCML, OPCML-IT1 |
| cg09531376 | chr11 | 133234072 | 133234074 | −0.3370 | 1.850 × 10−3 | −0.1560 | 4.630 × 10−3 | OPCML, OPCML-IT1 |
| cg16639665 | chr11 | 133402496 | 133402498 | 0.1380 | 3.450 × 10−2 | 0.1130 | 1.090 × 10−2 | OPCML |
| cg23236270 | chr11 | 133402499 | 133402501 | 0.1630 | 2.090 × 10−2 | 0.1150 | 4.540 × 10−3 | OPCML |
| cg15964611 | chr11 | 133402544 | 133402546 | 0.2070 | 2.630 × 10−3 | 0.1080 | 3.180 × 10−2 | OPCML |
Bold values represent CpG sites in OPCML promoter region.